Below you can find a list of all the topics covered by the workshop and links to their respective tutorials and lectures. Please note that not all topics have a tutorial associated with them, and are only covered by a lecture. Lectures should be considered short introductions to each topic, while the tutorials themselves contain all of the material covered by the workshop.
Topic | Lecture | Tutorial |
---|---|---|
Introduction | ||
Data management | ||
Git | ||
Conda | ||
Snakemake | ||
Nextflow | ||
Quarto | ||
Jupyter | ||
Containers | ||
Putting it all together | ||
Markdown | ||
Take-down |