Below you can find a list of all the topics covered by the workshop and links to their respective tutorials and lectures. Please note that not all topics have a tutorial associated with them, and are only covered by a lecture. Lectures should be considered short introductions to each topic, while the tutorials themselves contain all of the material covered by the workshop.
| Topic | Lecture | Tutorial |
|---|---|---|
| Introduction | ||
| Data management | ||
| Git | ||
| Conda | ||
| Snakemake | ||
| Nextflow | ||
| Quarto | ||
| Jupyter | ||
| Containers | ||
| Putting it all together | ||
| Markdown | ||
| Take-down |