Schedule

Time	Topic	Instructor
20-Apr-2026MonStockholm
09:00	Setting up and troubleshooting installations
10:00	Introduction to Reproducible Research	Erik Fasterius
10:25	Break
10:40	Data management and project organisation	John Sundh
11:10	Version tracking and distributing your code	Erik Fasterius
12:00	Lunch
13:00	… continued: Git
14:40	Break
15:00	Controlling your environment with Conda	John Sundh
16:45	Wrap-up day 1	Erik Fasterius
21-Apr-2026TueStockholm
09:00	Working with containers	John Sundh
10:20	Break
10:40	… continued: Containers
12:00	Lunch
13:00	… continued: Containers
15:00	Break
15:20	Writing computational notebooks and reproducible reports: Quarto	Erik Fasterius
16:45	Wrap-up day 2	John Sundh
18:00	Course dinner
22-Apr-2026WedStockholm
09:00	… continued: Quarto
09:45	Writing computational notebooks and reproducible reports: Jupyter	John Sundh
10:20	Break
10:40	… continued: Jupyter
12:00	Lunch
13:00	… continued: Jupyter
13:30	Organise your analyses using workflow managers: Snakemake	John Sundh
14:30	Break
14:50	… continued: Snakemake
16:45	Wrap-up day 3	John Sundh
23-Apr-2026ThuStockholm
09:00	… continued: Snakemake
10:30	Break
10:50	Organise your analyses using workflow managers: Nextflow	Erik Fasterius
12:00	Lunch
13:00	… continued: Nextflow
14:20	Break
14:40	… continued: Nextflow
16:45	Wrap-up day 4	Erik Fasterius
24-Apr-2026FriStockholm
09:00	Documentation	Erik Fasterius
09:15	Putting it all together	Erik Fasterius
10:20	Break
10:40	… continued: Putting it all together
12:00	Lunch
13:00	… continued: Putting it all together
14:20	Break
14:40	… continued: Putting it all together
15:45	Final wrap-up and end of the course	John Sundh

Date Venue Slides Lab Video