| Time |
Topic |
Instructor |
06-Oct-2025MonStockholm |
| 09:00 |
Introduction |
|
| 09:15 |
Project organisation showcases |
Elin Kronander |
| 10:00 |
Break |
|
| 10:20 |
Metadata |
Stephan Nylinder |
| 12:00 |
Lunch |
|
| 13:00 |
Version tracking and distributing your code |
John Sundh |
| 14:40 |
Break |
|
| 15:00 |
Controlling your environment with Conda |
John Sundh |
| 16:45 |
Wrap-up day 1 |
John Sundh |
07-Oct-2025TueStockholm |
| 09:00 |
Organise your analyses using workflow managers: Snakemake |
John Sundh |
| 10:20 |
Break |
|
| 10:40 |
… continued: Snakemake |
|
| 12:00 |
Lunch |
|
| 13:00 |
… continued: Snakemake |
|
| 14:40 |
Break |
|
| 15:00 |
Organise your analyses using workflow managers: Nextflow |
John Sundh |
| 16:45 |
Wrap-up day 2 |
John Sundh |
| 17:30 |
Course dinner @ Haga Bottega, Eugeniavägen 6 |
|
08-Oct-2025WedStockholm |
| 09:00 |
… continued: Nextflow |
|
| 10:20 |
Break |
|
| 10:40 |
… continued: Nextflow |
|
| 12:00 |
Lunch |
|
| 13:00 |
Writing computational notebooks and reproducible reports: Quarto |
John Sundh |
| 14:30 |
Break |
|
| 14:50 |
… continued: Quarto |
|
| 15:20 |
Writing computational notebooks and reproducible reports: Jupyter |
John Sundh |
| 16:45 |
Wrap-up day 3 |
John Sundh |
09-Oct-2025ThuStockholm |
| 09:00 |
… continued: Jupyter |
|
| 09:45 |
Working with containers |
John Sundh |
| 10:30 |
Break |
|
| 10:50 |
… continued: Containers |
|
| 12:00 |
Lunch |
|
| 13:00 |
… continued: Containers |
|
| 14:20 |
Break |
|
| 14:40 |
… continued: Containers |
|
| 16:45 |
Wrap-up day 4 |
John Sundh |
10-Oct-2025FriStockholm |
| 09:00 |
Putting it all together |
John Sundh |
| 10:20 |
Break |
|
| 10:40 |
… continued: Putting it all together |
|
| 12:00 |
Lunch |
|
| 13:00 |
… continued: Putting it all together |
|
| 14:20 |
Break |
|
| 14:40 |
… continued: Putting it all together |
|
| 15:45 |
Final wrap-up and end of the course |
John Sundh |
Date Venue Slides Lab Video