Beware! The schedule can still be subject to some changes.

Important Information If you are booking your travel: we start at 09:00, June 11 and will be done by 12:00 on June 21.

We will start each day at 09:00 (breakfast will be served before) and work till lunch at 12:30 and coffee break in the middle. At 13:30 we will return to our classroom and work till 17:30 with coffee break at 15:30. We will finish each day with a Q&A/feedback session 17:30-18:30.

• Day 0 Welcome and Mingle — ca. 18:00 - ca. 20:00, Sun, 10 June 2018, Café Foajé Almedalen, Campus Gotland

• Day 1 Better Coding Day — Mon, 11 June 2018, Campus Gotland ROOM B24 NBIS Staff: Nina Norgren, Sebastian DiLorenzo, Nikolay Oskolkov, Roy Francis, Marcin Kierczak

  • 09:00-10:00 – Welcome and Introduction,
  • 10:00-10:30 – Working with R Studio,
  • 10:30-11:00 – Coffee break,
  • 11:00-12:30 – Working with RStudio cted.,
  • 11:30-12:30 – Best coding practises (Marcin Kierczak) – presentation,
  • 12:30-13:30 – Lunch,
  • 13:30-15:00 – Best coding practises cted. lab,
  • 15:00-15:30 – Coffee break,
  • 15:30-17:30 – Reproducible research (Roy Francis) – presentation, lab
  • 17:30-18:30 – Feedback and Q&A session.

• Day 2 Packages, OOP and Scripts — Tue, 12 June 2018, Campus Gotland ROOMS B22 and B24 NBIS Staff: Nina Norgren, Diana Ekman, Sebastian DiLorenzo, Nikolay Oskolkov, Roy Francis, Marcin Kierczak

  • 09:00-10:30 – OOP and writing scripts (Marcin Kierczak) – presentation – scripts, presentation-OOP,
  • 10:30-11:00 – Coffee break,
  • 11:00-12:30 – OOP and writing scripts cted. lab – scripts, lab–OOP,
  • 12:30-13:30 – Lunch,
  • 13:30-15:00 – Anatomy of an R package (Sebastian DiLorenzo) – presentation,
  • 15:00-15:30 – Coffee break,
  • 15:30-17:00 – Anatomy of an R package cted. lab,
  • 17:00-18:00 – Some lesser known features of knitr (Yihui Xie) – presentation
    

• Day 3 Tidyverse and Graphics Day — Wed, 13 June 2018, Campus Gotland NBIS Staff: Nina Norgren, Diana Ekman, Bengt Sennblad, Sebastian DiLorenzo, Nikolay Oskolkov, Roy Francis, Marcin Kierczak

  • 09:00-10:30 – Tidyverse (Marcin Kierczak) – presentation,lab,datasets,
  • 10:30-11:00 – Coffee break,
    
  • 11:00-12:30 – Tidyverse cted.,
  • 12:30-13:30 – Lunch,
  • 13:30-15:00 – ggplot (Roy Francis) – presentation – ggplot,lab – ggplot
  • 15:00-15:30 – Coffee break,
  • 15:30-17:00 – ggmap (Sebastian DiLorenzo) – presentation – ggmap,lab – ggmap,data – ggmap
  • 17:00-18:00 – Bonus lecture: How to perform on stage (Ole Jansson).

• Day 4 Stats and Plotly Day — Thu, 14 June 2018, Campus Gotland

  • 09:00-10:30 – General statistics, presentation,extra reading,
  • 10:30-11:00 – Coffee break,
  • 11:00-12:30 – General statistics cted., lab,
  • 12:30-13:30 – Lunch,
  • 13:30-15:00 – General statstics cted., data,
  • 15:00-15:30 – Coffee break,
  • 15:30-17:30 – Own exercises,
  • Grill party at Mullbarsgarden.

• Day 5 Bioconductor Day — Fri, 15 June 2018, Campus Gotland

  • 09:00-10:30 – Dr Martin Morgan,Bioconductor, Session 1,
  • 10:30-11:00 – Coffee break,
    
  • 11:00-12:30 – Bioconductor ctd., Session 2,
  • 12:30-13:30 – Lunch,
  • 13:30-15:00 – Bioconductor ctd., Session 3,
  • 15:00-15:30 – Coffee break,
  • 15:30-17:30 – Bioconductor ctd., Session 4,
  • 17:30-18:30 – Parallell session: Plotly/GWAS workshop, Plotly Presentation, Plotly Lab / GWAS Workshop, GWAS Data,
    

During the following days, workshops will be run by our experts. The purpose is to learn particular topics in-depth but also to work with own data if you want.

• Day 6 Workshops Day 1 — Sat, 16 June 2018, Visby

  • 09:00-10:30 – RNAseq and ChIPseq workshop,
  • workshop RNA,
  • data RNA,
  • workshop ChIP,
  • data ChIP,
  • data ChIP input,
  • blacklist
  • 10:30-11:00 – Coffee break,
    
  • 11:00-12:30 – RNAseq and ChIPseq workshop,
    • Workshop RNA
    • Workshop Chip
    • Data RNA
    • Data Chip
    • Data Chip Input
    • Blacklist
  • 12:30-13:30 – Lunch,
  • 13:30-15:00 – Metagenomics workshop,presentation,workshop,data,
  • 15:00-15:30 – Coffee break,
  • 15:30-17:30 – Annotation workshop,workshop,
  • 19:00- – Official Dinner at Munkällaren.
    

• Day 7 Social Networking Day — Sun, 17 June 2018, Gotland

  • 9:00 Excursion to Fårö – in footsteps of Ingmar Bergman. Meet: Entrance to Campus Gotland 9 AM!
  • 17:30-19:30 – Panel discussion with our guests.
    

• Day 8 Workshops Day 2 — Mon, 18 June 2018, Campus Gotland

  • 09:00-10:30 – Spatial statistics workshop,presentation,workshop - Areal,workshop - Geostat,
  • 10:30-11:00 – Coffee break,
    
  • 11:00-12:30 – Spatial statistics workshop,
  • 12:30-13:30 – Lunch,
  • 13:30-15:00 – Machine learning workshop,presentation,workshop
  • 15:00-15:30 – Coffee break,
  • 15:30-17:30 – Machine learning workshop.

• Day 9 Workshops Day 3 — Tue, 19 June 2018, Campus Gotland

  • 09:00-10:30 – Shiny workshop,presentation,workshop,
    
  • 10:30-11:00 – Coffee break,
    
  • 11:00-12:30 – Shiny workshop,
  • 12:30-13:30 – Lunch,
  • 13:30-15:00 – Cancer genomics workshop,presentation,workshop 1,data,
  • 15:00-15:30 – Coffee break,
  • 15:30-17:00 – Cancer genomics workshop cted.,workshop 2,
  • 17:00-17:45 – Mystery bonus lecture 2 :-)

• Day 10 Workshops Day 4 — Wed, 20 June 2018, Campus Gotland

  • 09:00-10:30 – Statistics and experimental design workshop,presentation - statistics,workshop - statistics,data - statistics,Extra reading,
  • 10:30-11:00 – Coffee break,
    
  • 11:00-12:30 – Statistics and experimental design workshop cted.,lab - exp.dsgn,data - exp.dsgn
  • 12:30-13:30 – Lunch,
  • 13:30-15:00 – Single-cell workshop,presentation,workshop,data,
  • 15:00-15:30 – Coffee break,
  • 15:30-17:30 – Single-cell workshop,
  • 17:30-18:00 – Feedback session
    

• Day 11 Farewell — Thu, 21 June 2018, Campus Gotland

  • 09:00-10:30 – Feedback and official closing ceremony,
    
  • 10:30-11:00 – Farewell coffee break,

On all days there will be the main teacher from NBIS and TAs that will help with practical issues as well as give one-to-one feedback and help to participants.