Course Materials

RaukR 2023 • Advanced R for Bioinformatics

Topic Author Links
WEEK 1
12-Jun-2023 (Mon)
Introduction to RaukR Marcin Kierczak & Sebastian DiLorenzo
Functions and scripts Sebastian DiLorenzo Slides, Lab
Best Coding Practices in R Marcin Kierczak Slides, Lab
Documentation & Publishing with Quarto Roy Francis Slides, Lab
Debugging, Profiling and Optimisation Marcin Kierczak Slides, Lab
13-Jun-2023 (Tue)
Vectorization Sebastian DiLorenzo & Marcin Kierczak Slides, Lab
Parallelization Sebastian DiLorenzo & Marcin Kierczak Slides, Lab
Object-oriented programming Marcin Kierczak Slides, Lab
Introduction to Quarto Chris Dervieux, Posit Slides
Tables with gt package Richard Iannone, Posit Repo, Slides
14-Jun-2023 (Wed)
Tidyverse Marcin Kierczak Slides, Lab
git with R Sebastian DiLorenzo Slides, Lab
reticulate: Combining R with Python Nina Norgren Slides, Lab
15-Jun-2023 (Thu)
Plotting with ggplot2 Roy Francis & Lokesh Manoharan Slides, Lab
How to repeat yourself with Purrr Jenny Bryan, Posit Repo
16-Jun-2023 (Fri)
R Packages Jenny Bryan, Posit
Web apps with Shiny Roy Francis & Lokesh Manoharan Slides, Lab
WEEK 2
19-Jun-2023 (Mon)
Statistics and machine learning in R Nikolay Oskolkov Slides, Lab
Tidymodels Max Kuhn, Posit Slides