13-Apr-2026Monzoom |
| 09:00 - 09:30 |
Welcome and General introduction |
SR, JF |
| 09:30 - 10:30 |
Lecture: scRNAseq methods and NGI |
Henrik Gezelius |
| 10:30 - 11:00 |
Break |
|
| 11:00 - 12:00 |
Lecture: Quality control |
Åsa Björklund |
| 12:00 - 13:00 |
Lunch |
|
| 13:00 - 13:30 |
Intro to Exercises |
SR, JF |
| 13:30 - 15:00 |
Lab: Quality control |
Jennifer Fransson |
| 15:00 - 15:30 |
Break |
|
| 15:30 - 16:30 |
Lecture: Data normalization |
Yuan Li |
| 16:30 - 17:00 |
Quiz + Extra time |
SR, JF |
14-Apr-2026Tuezoom |
| 09:00 - 09:30 |
Quiz summary |
|
| 09:30 - 10:30 |
Lecture: Dimensionality reduction |
Susanne Reinsbach |
| 10:30 - 11:00 |
Break |
|
| 11:00 - 12:00 |
Lab: Dimensionality reduction |
Susanne Reinsbach |
| 12:00 - 13:00 |
Lunch |
|
| 13:00 - 14:00 |
Lecture: Batch correction + Integration |
Aditya Singh |
| 14:00 - 15:00 |
Lab: Data integration |
Aditya Singh |
| 15:00 - 15:30 |
Break |
|
| 15:30 - 16:30 |
Lecture: Clustering |
Åsa Björklund |
| 16:30 - 17:00 |
Quiz + Extra time |
SR, JF |
15-Apr-2026Wedzoom |
| 09:00 - 09:30 |
Quiz summary |
|
| 09:30 - 10:30 |
Lab: Clustering |
Susanne Reinsbach |
| 10:30 - 11:00 |
Break |
|
| 11:00 - 12:00 |
Lecture: Differential Gene Expression |
Jennifer Fransson |
| 12:00 - 13:00 |
Lunch |
|
| 13:00 - 14:00 |
Guest Lecture: Cell-Cell Communication |
Jose Liñares-Blanco |
| 14:00 - 14:30 |
Lecture: Gene set analysis |
Jennifer Fransson |
| 14:30 - 15:00 |
Break |
|
| 15:00 - 16:30 |
Lab: Differential expression |
Jennifer Fransson |
| 16:30 - 17:00 |
Quiz + Extra time |
SR, JF |
16-Apr-2026Thuzoom |
| 09:00 - 09:30 |
Quiz summary |
|
| 09:30 - 10:30 |
Lecture: Celltype prediction |
Fariba Roshanzamir |
| 10:30 - 11:00 |
Break |
|
| 11:00 - 12:00 |
Lab: Celltype prediction |
Fariba Roshanzamir |
| 12:00 - 13:00 |
Lunch |
|
| 13:00 - 14:00 |
Lecture: Trajectory inference |
Stefan Ebmeyer |
| 14:00 - 15:15 |
Lab: Trajectory inference |
Stefan Ebmeyer |
| 15:15 - 15:30 |
Quiz |
|
| 15:30 - 16:00 |
Break |
|
| 16:00 - 16:30 |
Workshop summary |
SR, JF |
| 16:30 - 17:00 |
Information about BYOD |
SR, JF |
27-Apr-2026Monzoom |
| 09:00 - 09:15 |
Intro to BYOD |
SR, JF |
| 09:15 - 09:30 |
Intro to Data Management |
|
| 09:30 - 12:00 |
BYOD |
SR, JF |
| 12:00 - 13:00 |
Lunch |
|
| 13:00 - 14:30 |
BYOD |
SR, JF |
| 14:30 - 16:00 |
Presentation of projects |
SR, JF |
| 16:00 - 16:30 |
BYOD summary |
SR, JF |
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