Schedule

The schedule is intended for when following a live workshop. If you are following this at your own pace, see Contents
Time Topic Instructor

31-Mar-2025Monzoom

09:00 - 09:30 Welcome and General introduction  ÅB, SR, JF
09:30 - 10:30 Lecture: scRNAseq methods and NGI  Henrik Gezelius
10:30 - 11:00 Break
11:00 - 12:00 Lecture: Quality control  Åsa Björklund
12:00 - 13:00 Lunch
13:00 - 13:30 Intro to Exercises  Åsa Björklund
13:30 - 15:00 Lab: Quality control  Åsa Björklund
15:00 - 15:30 Break
15:30 - 16:30 Lecture: Data normalization  Åsa Björklund
16:30 - 17:00 Wrap Up ÅB, SR, JF

01-Apr-2025Tuezoom

09:00 - 10:00 Lecture: Dimensionality reduction  Nikolay Oskolkov
10:00 - 10:30 Break
10:30 - 12:00 Lab: Dimensionality reduction  Nikolay Oskolkov
12:00 - 13:00 Lunch
13:00 - 14:00 Lecture: Batch correction + Integration  Nikolay Oskolkov
14:00 - 15:00 Lab: Data integration  Nikolay Oskolkov
15:00 - 15:30 Break
15:30 - 16:30 Lecture: Clustering  Åsa Björklund
16:30 - 17:00 Wrap Up ÅB, SR, JF

02-Apr-2025Wedzoom

09:00 - 10:00 Lab: Clustering  Åsa Björklund
10:00 - 10:30 Break
10:30 - 12:00 Lecture: Single Cell Epigenetics  Jakub Westholm
12:00 - 13:00 Lunch
13:00 - 14:00 Lecture: Differential Gene Expression  Jennifer Fransson
14:00 - 14:30 Lecture: Gene set analysis  Jennifer Fransson
14:30 - 15:00 Break
15:00 - 16:30 Lab: Differential expression  Jennifer Fransson
16:30 - 17:00 Wrap Up ÅB, SR, JF

03-Apr-2025Thuzoom

09:00 - 10:00 Lecture: Celltype prediction  Fariba Roshanzamir
10:00 - 10:30 Break
10:30 - 12:00 Lab: Celltype prediction  Fariba Roshanzamir
12:00 - 13:00 Lunch
13:00 - 14:00 Lecture: Trajectory inference  Paulo Czarnewski
14:00 - 15:30 Lab: Trajectory inference  Paulo Czarnewski
15:30 - 16:00 Break
16:00 - 16:30 Workshop summary  ÅB, SR, JF
16:30 - 17:00 Information about BYOD ÅB, SR, JF

10-Apr-2025Thuzoom

09:00 - 09:30 Intro to BYOD ÅB, SR, JF
09:30 - 12:00 BYOD ÅB, SR, JF
12:00 - 13:00 Lunch
13:00 - 14:30 BYOD ÅB, SR, JF
14:30 - 16:00 Presentation of projects ÅB, SR, JF
16:00 - 16:30 BYOD summary ÅB, SR, JF

Date Venue Slides Lab Form Video