31-Mar-2025Monzoom |
| 09:00 - 09:30 |
Welcome and General introduction |
ÅB, SR, JF |
| 09:30 - 10:30 |
Lecture: scRNAseq methods and NGI |
Henrik Gezelius |
| 10:30 - 11:00 |
Break |
|
| 11:00 - 12:00 |
Lecture: Quality control |
Åsa Björklund |
| 12:00 - 13:00 |
Lunch |
|
| 13:00 - 13:30 |
Intro to Exercises |
Åsa Björklund |
| 13:30 - 15:00 |
Lab: Quality control |
Åsa Björklund |
| 15:00 - 15:30 |
Break |
|
| 15:30 - 16:30 |
Lecture: Data normalization |
Åsa Björklund |
| 16:30 - 17:00 |
Wrap Up |
ÅB, SR, JF |
01-Apr-2025Tuezoom |
| 09:00 - 10:00 |
Lecture: Dimensionality reduction |
Nikolay Oskolkov |
| 10:00 - 10:30 |
Break |
|
| 10:30 - 12:00 |
Lab: Dimensionality reduction |
Nikolay Oskolkov |
| 12:00 - 13:00 |
Lunch |
|
| 13:00 - 14:00 |
Lecture: Batch correction + Integration |
Nikolay Oskolkov |
| 14:00 - 15:00 |
Lab: Data integration |
Nikolay Oskolkov |
| 15:00 - 15:30 |
Break |
|
| 15:30 - 16:30 |
Lecture: Clustering |
Åsa Björklund |
| 16:30 - 17:00 |
Wrap Up |
ÅB, SR, JF |
02-Apr-2025Wedzoom |
| 09:00 - 10:00 |
Lab: Clustering |
Åsa Björklund |
| 10:00 - 10:30 |
Break |
|
| 10:30 - 12:00 |
Lecture: Single Cell Epigenetics |
Jakub Westholm |
| 12:00 - 13:00 |
Lunch |
|
| 13:00 - 14:00 |
Lecture: Differential Gene Expression |
Jennifer Fransson |
| 14:00 - 14:30 |
Lecture: Gene set analysis |
Jennifer Fransson |
| 14:30 - 15:00 |
Break |
|
| 15:00 - 16:30 |
Lab: Differential expression |
Jennifer Fransson |
| 16:30 - 17:00 |
Wrap Up |
ÅB, SR, JF |
03-Apr-2025Thuzoom |
| 09:00 - 10:00 |
Lecture: Celltype prediction |
Fariba Roshanzamir |
| 10:00 - 10:30 |
Break |
|
| 10:30 - 12:00 |
Lab: Celltype prediction |
Fariba Roshanzamir |
| 12:00 - 13:00 |
Lunch |
|
| 13:00 - 14:00 |
Lecture: Trajectory inference |
Paulo Czarnewski |
| 14:00 - 15:30 |
Lab: Trajectory inference |
Paulo Czarnewski |
| 15:30 - 16:00 |
Break |
|
| 16:00 - 16:30 |
Workshop summary |
ÅB, SR, JF |
| 16:30 - 17:00 |
Information about BYOD |
ÅB, SR, JF |
10-Apr-2025Thuzoom |
| 09:00 - 09:30 |
Intro to BYOD |
ÅB, SR, JF |
| 09:30 - 12:00 |
BYOD |
ÅB, SR, JF |
| 12:00 - 13:00 |
Lunch |
|
| 13:00 - 14:30 |
BYOD |
ÅB, SR, JF |
| 14:30 - 16:00 |
Presentation of projects |
ÅB, SR, JF |
| 16:00 - 16:30 |
BYOD summary |
ÅB, SR, JF |
Date Venue Slides Lab Form Video