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Author

Jason Hill

Published

15-Nov-2023

Compute environment setup

If you haven’t already done so, please read Compute environment for information on how to prepare your working directory.

Learning objectives

Data setup

Tools

Execute the following command to load modules:

#| label: uppmax-load-modules
#| echo: true
#| eval: false
module load uppmax bioinfo-tools \
    R_packages/4.3.1

Copy the contents to a file environment.yml and install packages with mamba env update -f environment.yml.

channels:
  - conda-forge
  - bioconda
  - default
dependencies:
  - r-base

Instructions

Instructions are available via external URL: