Single RNA-seq data analysis with R



Single cell RNA-seq data analysis with R

This international hands-on course covers several aspects of single cell RNA-seq data analysis, ranging from clustering and differential gene expression analysis to trajectories, cell type identification and spatial transcriptomics. The course is kindly sponsored by the ELIXIR EXCELERATE project.



27.05.2019 - 29.05.2019


The course is organised in the training room Dogmi at CSC. When you come to the main entrance, turn right to the reception and follow the signs to the course. The street address is Keilaranta 14, Espoo, Finland. You can reach us easily by public transport, please find more details here.

Course computing environment

The software and data required for the exercises have been installed on the classroom computers, and they are also available in CSC’s cPouta cloud as a virtual machine image. Please read the instructions and how to install the environment on your own computer after the course with Conda.


Monday 27.5.2019

Tuesday 28.5.2019

Wednesday 29.5.2019


In order to participate in this course you should have prior experience in using R.

Learning objectives

After this course you will be able to:


Additional information