|
Time
|
Topic
|
Teacher
|
Assistant
|
|
17-May-2021MonOnline
|
|
09:00 - 09:20
|
Welcome
|
Martin Dahlö
|
|
|
09:20 - 10:00
|
Presentations
|
Martin Dahlö
|
|
|
10:00 - 11:00
|
Intro to Linux
|
Martin Dahlö
|
AS,JT,LS,NR
|
|
11:00 - 12:00
|
Intro to Linux
|
Martin Dahlö
|
AS,JT,LS,NR
|
|
12:00 - 13:00
|
Lunch
|
|
|
|
13:00 - 14:00
|
Intro to Uppmax
|
Martin Dahlö
|
AS,LS,NR
|
|
14:00 - 17:00
|
Intro to Uppmax
|
Martin Dahlö
|
AS,LS,NR
|
|
18-May-2021TueOnline
|
|
09:00 - 09:30
|
File types in Bioinformatics
|
Martin Dahlö
|
AS,JT,NR
|
|
09:30 - 10:00
|
File types in Bioinformatics
|
Martin Dahlö
|
AS,JT,NR
|
|
11:00 - 12:00
|
Quality control
|
Malin Larsson
|
JT,NR
|
|
12:00 - 13:00
|
Lunch
|
|
|
|
13:00 - 13:15
|
Quality control wrap-up
|
Malin Larsson
|
JN
|
|
13:15 - 13:45
|
Better terminal experience
|
Martin Dahlö
|
AS,JN
|
|
13:45 - 14:45
|
Advanced Bash
|
Martin Dahlö
|
AS,JN
|
|
14:45 - 17:00
|
Advanced Bash
|
Martin Dahlö
|
AS,JN
|
|
19-May-2021WedOnline
|
|
09:00 - 10:00
|
NGS tech & challenges
|
Olga Vinnere Petterson
|
|
|
10:00 - 11:00
|
NGS tech & challenges
|
Olga Vinnere Petterson
|
|
|
11:00 - 12:00
|
NGS Pipelines
|
Adam Ameur
|
|
|
12:00 - 13:00
|
Lunch
|
|
|
|
13:00 - 13:45
|
Variant-calling workflow
|
Malin Larsson
|
|
|
14:00 - 17:00
|
Variant-calling workflow
|
Malin Larsson
|
AJ,DE,NN
|
|
20-May-2021ThuOnline
|
|
09:00 - 12:00
|
Variant-calling workflow
|
Malin Larsson
|
AJ,DE,NN
|
|
12:00 - 13:00
|
Lunch
|
|
|
|
13:00 - 17:00
|
RNA-Seq workflow
|
Roy Francis
|
DA,JL,SR
|
|
21-May-2021FriOnline
|
|
09:00 - 12:00
|
RNA-Seq workflow
|
Roy Francis
|
DA,JL,SR
|
|
12:00 - 13:00
|
Lunch
|
|
|
|
13:00 - 13:15
|
Presenting NBIS
|
Dag Ahrén
|
|
|
13:15 - 15:00
|
Open session
|
Dag Ahrén
|
|
Date
Venue
Slides
Exercises
AA: Adam Ameur, AJ: Anna Johansson, AS: Anders Sjölander, DA: Dag Ahren, DE: Diana Ekman, JT: Jeanette Tångrot, JN: Jon Ander Nouvella, JL: Julie Lorent, LS: Lucile Soler, ML: Malin Larsson, MD: Martin Dalhö, NR: Nima Rafati, NN: Nina Norgren, OP: Olga Petterson, RF: Roy Francis, SR: Susanne Reinsbach
