Course is held at SciLifeLab, Gamma 2, Room: Fire Tomtebodavagen 23A, 171 65 Solna
Room: Fire, Gamma 2
08.45 - 09.00 pre-course coffee
09:00 - 09.15 Welcome (Olga, Agata)
09.15 - 10.15 Lecture: ChIP-seq data analysis principles (Agata)
10.15 - 10.30 Discussion: getting to know each other (Agata, Jakub, Olga)
10.15 - 10.45 Introduction to practicals I: data processing (Agata, Jakub, Olga)
10.30 - 12.00 Practicals: ChIP-seq data processing (Agata, Jakub, Olga, John/Diana)
12.00 - 13.30 lunch
13.30 - 17.00 Practicals: ChIP-seq data processing (Agata, Jakub, Olga, John/Diana)
Room: Fire, Gamma 2
09:00 - 09.30 Discussion: ChIP-seq data processing (Agata, Jakub, Olga)
09.30 - 10.30 Introduction to practicals II:
10.30 - 12.00 Practicals: downstream analysis (Agata, Jakub, Olga, John/Diana)
12.00 - 13.30 lunch
13.00 - 14.00 Lecture: case study and beyond (all the interesting things) (Jakub, Agata)
Parallel session
13.30 - 17.10 Practicals: downstream analysis (John/Diana)
13.30 - 17.00 Discussion: bring your own project (Agata, Jakub, Olga)
Room: Fire, Gamma 2
09.00 - 10.00 Introduction to SciLifeLab NGI ChIP-seq pipeline (Phil Ewels)
10.00 - 10.30 Discussions: downstream analysis
10.30 - 11.00 Introduction to practicals III
11.00 - 12.00 Practicals: downstream analysis (Agata, Jakub, Olga, John/Diana)
12.00 - 13.30 lunch
13.30 - 14.30 Practicals: downstream analysis (Agata, Jakub, Olga, John/Diana)
14.30 - 17.00 Discussion & wrap-up (Agata, Jakub, Olga)
coffee and snacks will arrive twice a day
lunch will be at: Svarta Räfven
Teaching team