Breaks are planned for approximately 10:15 and 15:00 every day.
| Time |
Topic |
Instructor |
Assistant |
02-Mar-2026MonOnline |
| 09:00 - 09:30 |
Welcome |
Martin Dahlö |
|
| 09:30 - 10:30 |
Intro to Linux |
Martin Dahlö |
|
| 10:30 - 12:00 |
Intro to Linux |
Martin Dahlö |
KGKarl Grönberg,RFRoy Francis,MPMartin Pippel |
| 12:00 - 13:00 |
Lunch |
|
|
| 13:00 - 14:00 |
Intro to HPC cluster |
Martin Dahlö |
|
| 14:00 - 17:00 |
Intro to HPC cluster |
Martin Dahlö |
KGKarl Grönberg,RFRoy Francis,MPMartin Pippel |
03-Mar-2026TueOnline |
| 09:00 - 09:30 |
File types in Bioinformatics |
Martin Dahlö |
|
| 09:30 - 11:00 |
File types in Bioinformatics |
Martin Dahlö |
KGKarl Grönberg,RFRoy Francis,MPMartin Pippel |
| 11:00 - 12:00 |
Better terminal experience |
Martin Dahlö |
|
| 12:00 - 13:00 |
Lunch |
|
|
| 13:00 - 14:00 |
Quality control |
Marcel Martin |
JHJason Hill |
| 14:00 - 15:00 |
Advanced Bash |
Martin Dahlö |
|
| 15:00 - 17:00 |
Advanced Bash |
Martin Dahlö |
KGKarl Grönberg,JHJason Hill |
04-Mar-2026WedOnline |
| 09:00 - 10:00 |
NGS technologies |
Johanna Lagensjö |
|
| 10:15 - 12:00 |
NGS pipelines |
Christian Tellgren-Roth |
|
| 12:00 - 13:00 |
Lunch |
|
|
| 13:00 - 14:00 |
Variant-calling workflow |
Diana Ekman |
|
| 14:00 - 17:00 |
Variant-calling workflow |
Diana Ekman |
MLMalin Larsson,MPMartin Pippel |
05-Mar-2026ThuOnline |
| 09:00 - 09:30 |
GATK best practices |
Diana Ekman |
|
| 09:30 - 12:00 |
Variant-calling workflow |
Diana Ekman |
MLMalin Larsson,AJAnna Johansson |
| 12:00 - 13:00 |
Lunch |
|
|
| 13:00 - 14:30 |
RNA-Seq workflow |
Roy Francis |
|
| 14:30 - 17:00 |
RNA-Seq workflow |
Roy Francis |
SSSnaevar Sigurdsson,MPMartin Pippel |
06-Mar-2026FriOnline |
| 09:00 - 12:00 |
RNA-Seq workflow |
Roy Francis |
DADag Ahren,SSSnaevar Sigurdsson,MPMartin Pippel |
| 12:00 - 13:00 |
Lunch |
|
|
| 13:00 - 14:00 |
Data management practices |
Maria Vrettou |
|
| 14:00 - 14:15 |
NBIS |
Dag Ahrén |
|
| 14:15 - 14:30 |
Feedback |
Roy Francis |
|
Date Venue Slides Lab Video