Schedule

The schedule is intended for when following a live workshop. If you are following this at your own pace, see Contents
Note

Breaks are planned for approximately 10:15 and 15:00 every day. Note that the presentations and videos may not be in sync because the presentations were updated while the videos are from previous workshops.

Time Topic Instructor Assistant

02-Mar-2026MonOnline

09:00 - 09:30 Welcome Martin Dahlö
09:30 - 10:30 Intro to Linux Martin Dahlö
10:30 - 12:00 Intro to Linux Martin Dahlö KGKarl Grönberg,RFRoy Francis,MPMartin Pippel,LELeslie Solorzano
12:00 - 13:00 Lunch
13:00 - 14:00 Intro to HPC cluster Martin Dahlö
14:00 - 17:00 Intro to HPC cluster Martin Dahlö KGKarl Grönberg,RFRoy Francis,MPMartin Pippel,LELeslie Solorzano

03-Mar-2026TueOnline

09:00 - 09:30 File types in Bioinformatics Martin Dahlö
09:30 - 11:00 File types in Bioinformatics Martin Dahlö KGKarl Grönberg,RFRoy Francis,MPMartin Pippel
11:00 - 12:00 Better terminal experience Martin Dahlö
12:00 - 13:00 Lunch
13:00 - 14:00 Quality control Marcel Martin JHJason Hill,LALore Ament
14:00 - 15:00 Advanced Bash Martin Dahlö
15:00 - 17:00 Advanced Bash Martin Dahlö KGKarl Grönberg,JHJason Hill

04-Mar-2026WedOnline

09:00 - 10:00 NGS technologies Johanna Lagensjö
10:15 - 12:00 NGS long reads & pipelines Christian Tellgren-Roth
12:00 - 13:00 Lunch
13:00 - 14:00 Variant-calling workflow Diana Ekman
14:00 - 17:00 Variant-calling workflow Diana Ekman MLMalin Larsson,MPMartin Pippel,LALore Ament

05-Mar-2026ThuOnline

09:00 - 09:30 GATK best practices Diana Ekman
09:30 - 12:00 Variant-calling workflow Diana Ekman MLMalin Larsson,AJAnna Johansson,PPPaul Pyl,LALore Ament
12:00 - 13:00 Lunch
13:00 - 14:30 RNA-Seq workflow Roy Francis
14:30 - 17:00 RNA-Seq workflow Roy Francis SSSnaevar Sigurdsson,MPMartin Pippel,PPPaul Pyl

06-Mar-2026FriOnline

09:00 - 10:00 Data management practices Maria Vrettou
10:00 - 10:30 NBIS Presentation Dag Ahrén
10:30 - 12:00 RNA-Seq workflow Roy Francis DADag Ahren,SSSnaevar Sigurdsson,MPMartin Pippel,PPPaul Pyl
12:00 - 13:00 Lunch
13:30 - 14:15 RNA-Seq workflow Roy Francis DADag Ahren,SSSnaevar Sigurdsson,MPMartin Pippel,PPPaul Pyl
14:15 - 14:30 Feedback Roy Francis

Date Venue Slides Lab Video