Schedule

The schedule is intended for when following a live workshop. If you are following this at your own pace, see Contents
Note

Coffee breaks are planned for approximately 10:00 and 14:30 every day.

Time Topic Instructor Assistant

25-Nov-2024MonRoom Papaver, Hus 511/001, LiU

09:00 - 09:30 Welcome Martin Dahlö MLMalin Larsson,JDJyotirmoy Das
09:30 - 10:30 Intro to Linux Martin Dahlö
10:30 - 12:00 Intro to Linux Martin Dahlö MLMalin Larsson,JDJyotirmoy Das
12:00 - 13:00 Lunch
13:00 - 14:00 Intro to high-performance computing Martin Dahlö
14:00 - 17:00 Intro to high-performance computing Martin Dahlö MLMalin Larsson,JDJyotirmoy Das

26-Nov-2024TueRoom Papaver, Hus 511/001, LiU

09:00 - 09:30 File types in Bioinformatics Martin Dahlö
09:30 - 11:00 File types in Bioinformatics Martin Dahlö MLMalin Larsson,JDJyotirmoy Das
11:00 - 12:00 Better terminal experience Martin Dahlö
12:00 - 13:00 Lunch
13:00 - 14:00 Quality control Malin Larsson MDMartin Dahlö,JDJyotirmoy Das
14:00 - 15:00 Advanced Bash Martin Dahlö
15:00 - 17:00 Advanced Bash Martin Dahlö MLMalin Larsson,JDJyotirmoy Das

27-Nov-2024WedRoom Dolomit, Hus 440, LiU

09:00 - 12:00 NGS tech & challenges Adam Ameur & Johanna Lagensjö
12:00 - 13:00 Lunch
13:00 - 14:00 Variant-calling workflow Malin Larsson
14:00 - 17:00 Variant-calling workflow Malin Larsson DEDE,JDJyotirmoy Das

28-Nov-2024ThuRoom Dolomit, Hus 440, LiU

09:00 - 09:30 GATK best practices Malin Larsson
09:30 - 12:00 Variant-calling workflow Malin Larsson DEDE,JDJyotirmoy Das
12:00 - 13:00 Lunch
13:00 - 14:00 RNA-Seq workflow Dag Ahrén
14:00 - 17:00 RNA-Seq workflow Dag Ahrén RFRoy Francis,MLMalin Larsson,JDJyotirmoy Das
18:00 - 20:00 Course Dinner at Pappa Grappa

29-Nov-2024FriRoom Antracit, Hus 440, LiU

09:00 - 12:00 RNA-Seq workflow Dag Ahrén RFRoy Francis,MLMalin Larsson,JDJyotirmoy Das
12:00 - 13:00 Lunch
13:00 - 14:00 Data management practices Elin Kronander
14:00 - 14:15 NBIS Malin Larsson

Date Venue Slides Lab Video