Coffee breaks are planned for approximately 10:00 and 14:30 every day.
13-Nov-2023MonUppsala |
| 09:00 - 09:30 |
Welcome and general introduction |
Martin Dahlö |
|
| 09:30 - 10:30 |
Intro to Linux |
Martin Dahlö |
|
| 10:30 - 11:45 |
Intro to Linux |
Martin Dahlö |
GDGuilherme Dias,LSLucile Soler |
| 11:45 - 13:00 |
Lunch |
|
|
| 13:00 - 14:00 |
Intro to Uppmax |
Martin Dahlö |
|
| 14:00 - 17:00 |
Intro to Uppmax |
Martin Dahlö |
GDGuilherme Dias |
14-Nov-2023TueUppsala |
| 09:00 - 09:30 |
File types in Bioinformatics |
Martin Dahlö |
|
| 09:30 - 11:00 |
File types in Bioinformatics |
Martin Dahlö |
MRMiguel Redondo,MPMartin Pippel |
| 11:00 - 11:45 |
Better terminal experience |
Martin Dahlö |
|
| 11:45 - 13:00 |
Lunch |
|
|
| 13:00 - 14:00 |
Quality control |
Malin Larsson |
GDGuilherme Dias,MPMartin Pippel |
| 14:00 - 15:00 |
Advanced Bash |
Martin Dahlö |
|
| 15:00 - 17:00 |
Advanced Bash |
Martin Dahlö |
KLKatarina Lejonlid,MPMartin Pippel |
15-Nov-2023WedUppsala |
| 09:00 - 10:15 |
NGS tech & challenges |
Adam Ameur & Johanna Lagensjö |
|
| 10:15 - 11:00 |
NGS tech & challenges |
Adam Ameur & Johanna Lagensjö |
|
| 11:00 - 11:45 |
NGS Pipelines |
Adam Ameur |
|
| 12:00 - 13:00 |
Lunch |
|
|
| 13:00 - 14:00 |
Variant-calling workflow |
Malin Larsson |
|
| 14:00 - 17:00 |
Variant-calling workflow |
Malin Larsson |
JHJason Hill,MMMarkus Mayrhofer |
| 18:00 - 21:00 |
Course Dinner |
|
|
16-Nov-2023ThuUppsala |
| 09:00 - 09:30 |
GATK best practices |
Malin Larsson |
|
| 09:30 - 11:45 |
Variant-calling workflow |
Malin Larsson |
AJAnna Johansson,MMMarkus Mayrhofer |
| 11:45 - 13:00 |
Lunch |
|
|
| 13:00 - 14:00 |
RNA-Seq workflow |
Roy Francis |
|
| 14:00 - 17:00 |
RNA-Seq workflow |
Roy Francis |
MLMalin Larsson,VHVincent van Hoef |
17-Nov-2023FriUppsala |
| 09:00 - 11:45 |
RNA-Seq workflow |
Roy Francis |
VHVincent van Hoef,MDMartin Dahlö |
| 11:45 - 13:00 |
Lunch |
|
|
| 13:00 - 14:00 |
Data management practices |
Elin Kronander |
|
| 14:00 - 14:15 |
NBIS |
Elin Kronander |
|
Date Venue Slides Lab Video