Coffee breaks are planned for 10:15 and 15:00 every day.

Time Topic Teacher Assistant

26-Sep-2022MonE10:1309

09:00 - 09:30 Welcome and general introduction Martin Dahlö
09:30 - 10:30 Intro to Linux Martin Dahlö
10:30 - 11:45 Intro to Linux Martin Dahlö KL, BV
11:45 - 13:00 Lunch
13:00 - 14:00 Intro to Uppmax Martin Dahlö
14:00 - 17:00 Intro to Uppmax Martin Dahlö BV, JN

27-Sep-2022TueE10:1309

09:00 - 09:30 File types in Bioinformatics Martin Dahlö
09:30 - 11:00 File types in Bioinformatics Martin Dahlö BV, JN
11:00 - 11:45 Better terminal experience Martin Dahlö KL, BV
11:45 - 13:00 Lunch
13:00 - 14:00 Quality control Markus Mayrhofer MD, BV
14:00 - 15:00 Advanced Bash Martin Dahlö
15:00 - 17:00 Advanced Bash Martin Dahlö KL, BV

28-Sep-2022WedE10:1309

09:00 - 10:15 NGS tech & challenges Olga Vinnere Petterson
10:15 - 11:00 NGS tech & challenges Olga Vinnere Petterson
11:00 - 11:45 NGS Pipelines Adam Ameur
11:45 - 13:00 Lunch
13:00 - 14:00 Variant-calling workflow Markus Mayrhofer
14:00 - 17:00 Variant-calling workflow Markus Mayrhofer DE, AJ
18:00 - 21:00 Dinner

29-Sep-2022ThuE10:1309

09:00 - 09:30 Variant-calling workflow Markus Mayrhofer
09:30 - 11:45 Variant-calling workflow Markus Mayrhofer DE, AJ
11:45 - 13:00 Lunch
13:00 - 14:00 RNA-Seq workflow Dag Ahren/Roy Francis
14:00 - 17:00 RNA-Seq workflow Dag Ahren RF, VVH

30-Sep-2022FriE10:1309

09:00 - 11:45 RNA-Seq workflow Dag Ahren RF, VVH, NR
11:45 - 13:00 Lunch
13:00 - 13:15 Presenting NBIS Dag Ahrén
13:15 - 15:00 Open session Dag Ahrén RF, VVH, OVP, AA

Date Venue Slides Exercises

AA: Adam Ameur, BV: Björn Viklund, DA: Dag Ahren, DE: Diana Ekman, JN: Jon Ander Novella, KL: Katarina Lejonlid, MD: Martin Dahlö, ML: Malin Larsson, MM: Markus Mayrhofer, NR: Nima Rafati, OVP: Olga Vinnere Pettersson, RF: Roy Francis, VVH: Vincent van Hoef