install.packages(c("cowplot","crosstalk","dplyr","DT","gganimate","ggiraph",
"ggplot2","ggpubr","ggrepel","ggthemes","grid","gridExtra",
"gt", "kableExtra","leaflet","palmerpenguins","patchwork",
"pheatmap","plotly","reshape2","scales","Seurat","shiny",
"tidyr","tidyverse","wesanderson"), dependencies = TRUE)
Installations
R
Download and install the latest version of R from r-project.org.
IDE
Install RStudio. RStudio provides you with tools like code editor with highlighting, project management, version control, package building, debugger, profiler and more. Visual Studio code is another good alternative to RStudio.
Quarto
Download and install the latest version of Quarto from quarto.org.
R packages
Install all the R packages necessary for this course by opening an R terminal
either in Rstudio or VScode and pasting the following command:
To make sure that the installations went well, we will try to make a quick plot using the packages you just installed. In this plot, we try to see if there is correlation plot between BMI
and average no.of steps
taken by some volunteers per day. The data and the code for plotting is available here. Just render
or preview
the installation_check.qmd
file in RStudio or VScode. and you should see the correlation plot, if all the packages are installed properly.
HackMD
We will use the online note-keeping document from HackMD for our questions. Please click here to see the notebook. We would appreciate it a lot if you could write your questions and feedback here, so that all participants can learn from each other.
Preparations
To prepare for the course, you can follow one of the links below to warm up your skills necessary for the course.
- Beginner-level: Basic warm-up exercises in R
- Advanced-level: ggplot warm-up