GitHub Pages

Welcome to NBIS GitHub pages

If you are looking for a specific website, you need a URL in this format: nbisweden.github.io/repo. Here is a list of some of our most recently visited GitHub pages:

AGAT
Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
https://nbisweden.github.io/AGAT/
Last Updated: 13-Jan-2026

workshop-scRNAseq
Single cell RNA sequencing analysis course
https://nbisweden.github.io/workshop-scRNAseq/
Last Updated: 18-Mar-2026

workshop-reproducible-research
NBIS/Elixir course: Tools for Reproducible Research
https://nbisweden.github.io/workshop-reproducible-research/
Last Updated: 26-Jan-2026

workshop_omics_integration
Workshop in omics integration and systems biology
https://nbisweden.github.io/workshop_omics_integration/
Last Updated: 21-Oct-2024

workshop-ngsintro
Workshop • Intro to Bioinformatics using NGS data • 5 days
https://nbisweden.github.io/workshop-ngsintro/
Last Updated: 16-Mar-2026

module-organising-data-dm-practices
No description available
https://nbisweden.github.io/module-organising-data-dm-practices/
Last Updated: 19-Mar-2026

workshop-RNAseq
Workshop • Analysis of RNA-seq data
https://nbisweden.github.io/workshop-RNAseq/
Last Updated: 15-Mar-2024

module-dmp-dm-practices
No description available
https://nbisweden.github.io/module-dmp-dm-practices/
Last Updated: 19-Mar-2026

single-cell_sib_scilifelab
SIB/Scilifelab autumn school in single cell omics 2019.
https://nbisweden.github.io/single-cell_sib_scilifelab/
Last Updated: 28-Oct-2019

workshop-mlbiostatistics
Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods
https://nbisweden.github.io/workshop-mlbiostatistics/
Last Updated: 19-Jan-2026

module-openrefine-dm-practices
No description available
https://nbisweden.github.io/module-openrefine-dm-practices/
Last Updated: 19-Mar-2026

workshop-neural-nets-and-deep-learning
NBIS workshop in Neural Nets and Deep Learning
https://nbisweden.github.io/workshop-neural-nets-and-deep-learning/
Last Updated: 22-May-2024

workshop-python
No description available
https://nbisweden.github.io/workshop-python/
Last Updated: 12-May-2025

sauron
Website is at:
https://nbisweden.github.io/sauron/
Last Updated: 28-Apr-2021

genecovr
Gene body coverage in assemblies in R
https://nbisweden.github.io/genecovr/
Last Updated: 21-Dec-2023

module-metadata-dm-practices
Metadata module for Data Management course (carpentries style)
https://nbisweden.github.io/module-metadata-dm-practices/
Last Updated: 19-Mar-2026

raukrtemplate
Presentation & lab RMarkdown templates for RaukR course
https://nbisweden.github.io/raukrtemplate/
Last Updated: 19-Apr-2022

raukr-2026
Raukr 2026 • NBIS Summer School • R Beyond the Basics
https://nbisweden.github.io/raukr-2026/
Last Updated: 23-Feb-2026

raukr-2025
Raukr 2025 • NBIS Summer School • R Beyond the Basics
https://nbisweden.github.io/raukr-2025/
Last Updated: 23-Jun-2025

module-open-science-dm-practices
Open Science module for Data Management course (carpentries style)
https://nbisweden.github.io/module-open-science-dm-practices/
Last Updated: 19-Mar-2026

easyshiny
Shiny web app builder for single-cell data
https://nbisweden.github.io/easyshiny/
Last Updated: 14-Apr-2023

SCoRe_user_doc
SCoRe user documentation
https://docs.score.nbis.se/
Last Updated: 17-Mar-2026

workshop-genome_assembly
No description available
https://nbisweden.github.io/workshop-genome_assembly/
Last Updated: 21-Dec-2018

module-versioning-dm-practices
No description available
https://nbisweden.github.io/module-versioning-dm-practices/
Last Updated: 28-Mar-2025

single-cell_sib_scilifelab_2021
SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/
https://nbisweden.github.io/single-cell_sib_scilifelab_2021/
Last Updated: 19-Sep-2021

workshop-genome_annotation
This is the NBIS repository for the Genome Annotation Workshop.
https://nbisweden.github.io/workshop-genome_annotation/
Last Updated: 23-Apr-2021

raukr-2024
NBIS Summer School • Advanced R for Bioinformatics
https://nbisweden.github.io/raukr-2024/
Last Updated: 26-May-2025

workshop-snakemake-byoc
No description available
https://nbisweden.github.io/workshop-snakemake-byoc/
Last Updated: 03-Jun-2024

workshop-r
Workshop • R Programming Foundations for Life Scientists • 5 days
https://nbisweden.github.io/workshop-r/
Last Updated: 04-Dec-2025

workshop-genome_annotation_elixir
genome annotation course within ELIXIR
https://nbisweden.github.io/workshop-genome_annotation_elixir/
Last Updated: 07-May-2021

workshop-epigenomics
No description available
https://nbisweden.github.io/workshop-epigenomics/
Last Updated: 26-Sep-2024

workshop-bioinformatics-for-PIs
NBIS course Bioinformatics for Principal Investigators
https://nbisweden.github.io/workshop-bioinformatics-for-PIs/
Last Updated: 24-Aug-2020

raukr-2023
NBIS Summer School • Advanced R for Bioinformatics
https://nbisweden.github.io/raukr-2023/
Last Updated: 04-Aug-2023

data-management-gym
Repository for Data Management training session modules
https://nbisweden.github.io/data-management-gym/
Last Updated: 27-Feb-2017

ReprRes_G_Arnqvist_1305
Reproducible research repository for NBIS project G Arnqvist 1305
https://nbisweden.github.io/ReprRes_G_Arnqvist_1305/
Last Updated: 30-Aug-2019

RaukR-2022
RaukR 2022 Teaching Materials
https://nbisweden.github.io/RaukR-2022/
Last Updated: 17-Jun-2022

Knox-ePouta
Connection between Knox (Sweden) and ePouta (Finland)
https://nbisweden.github.io/Knox-ePouta/
Last Updated: 20-Jan-2017

Grapevine
A natural language based workflow management system
https://nbisweden.github.io/Grapevine/
Last Updated: 09-Jun-2021