GitHub Pages

Welcome to NBIS GitHub pages

If you are looking for a specific website, you need a URL in this format: nbisweden.github.io/repo. Here is a list of some of our most recently visited GitHub pages:

AGAT
Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
https://nbisweden.github.io/AGAT/
Last Updated: 13-Jan-2026

workshop-scRNAseq
Single cell RNA sequencing analysis course
https://nbisweden.github.io/workshop-scRNAseq/
Last Updated: 09-Jan-2026

module-openrefine-dm-practices
No description available
https://nbisweden.github.io/module-openrefine-dm-practices/
Last Updated: 10-Feb-2026

book-club
Book Club • Book Collection
https://nbisweden.github.io/book-club/
Last Updated: 10-Feb-2026

module-organising-data-dm-practices
No description available
https://nbisweden.github.io/module-organising-data-dm-practices/
Last Updated: 10-Feb-2026

workshop-reproducible-research
NBIS/Elixir course: Tools for Reproducible Research
https://nbisweden.github.io/workshop-reproducible-research/
Last Updated: 26-Jan-2026

workshop_omics_integration
Workshop in omics integration and systems biology
https://nbisweden.github.io/workshop_omics_integration/
Last Updated: 21-Oct-2024

module-dmp-dm-practices
No description available
https://nbisweden.github.io/module-dmp-dm-practices/
Last Updated: 06-Feb-2026

workshop-neural-nets-and-deep-learning
NBIS workshop in Neural Nets and Deep Learning
https://nbisweden.github.io/workshop-neural-nets-and-deep-learning/
Last Updated: 22-May-2024

raukr-2025
Raukr 2025 • NBIS Summer School • R Beyond the Basics
https://nbisweden.github.io/raukr-2025/
Last Updated: 23-Jun-2025

workshop-scRNAseq-devel
Single cell RNA sequencing analysis course
https://nbisweden.github.io/workshop-scRNAseq-devel/
Last Updated: 28-Feb-2025

workshop-ngsintro
Workshop • Intro to Bioinformatics using NGS data • 5 days
https://nbisweden.github.io/workshop-ngsintro/
Last Updated: 13-Feb-2026

workshop-mlbiostatistics
Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods
https://nbisweden.github.io/workshop-mlbiostatistics/
Last Updated: 19-Jan-2026

module-versioning-dm-practices
No description available
https://nbisweden.github.io/module-versioning-dm-practices/
Last Updated: 28-Mar-2025

module-open-science-dm-practices
Open Science module for Data Management course (carpentries style)
https://nbisweden.github.io/module-open-science-dm-practices/
Last Updated: 05-Sep-2025

workshop-RNAseq
Workshop • Analysis of RNA-seq data
https://nbisweden.github.io/workshop-RNAseq/
Last Updated: 15-Mar-2024

single-cell_sib_scilifelab_2021
SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/
https://nbisweden.github.io/single-cell_sib_scilifelab_2021/
Last Updated: 19-Sep-2021

SCoRe_user_doc
SCoRe user documentation
https://docs.score.nbis.se/
Last Updated: 12-Feb-2026

raukr-2024
NBIS Summer School • Advanced R for Bioinformatics
https://nbisweden.github.io/raukr-2024/
Last Updated: 26-May-2025

workshop-r
Workshop • R Programming Foundations for Life Scientists • 5 days
https://nbisweden.github.io/workshop-r/
Last Updated: 04-Dec-2025

module-metadata-dm-practices
Metadata module for Data Management course (carpentries style)
https://nbisweden.github.io/module-metadata-dm-practices/
Last Updated: 28-Mar-2025

single-cell_sib_scilifelab
SIB/Scilifelab autumn school in single cell omics 2019.
https://nbisweden.github.io/single-cell_sib_scilifelab/
Last Updated: 28-Oct-2019

sauron
Website is at:
https://nbisweden.github.io/sauron/
Last Updated: 28-Apr-2021

genecovr
Gene body coverage in assemblies in R
https://nbisweden.github.io/genecovr/
Last Updated: 21-Dec-2023

ReprRes_J_Lehtio_1411
Reproducible Research resources for NBIS LT project j_lehtio_1411
https://nbisweden.github.io/ReprRes_J_Lehtio_1411/
Last Updated: 19-Oct-2018

workshop-genome_annotation_elixir
genome annotation course within ELIXIR
https://nbisweden.github.io/workshop-genome_annotation_elixir/
Last Updated: 07-May-2021

raukr-2026
Raukr 2026 • NBIS Summer School • R Beyond the Basics
https://nbisweden.github.io/raukr-2026/
Last Updated: 19-Jan-2026

workshop-genome_annotation
This is the NBIS repository for the Genome Annotation Workshop.
https://nbisweden.github.io/workshop-genome_annotation/
Last Updated: 23-Apr-2021

workshop-python
No description available
https://nbisweden.github.io/workshop-python/
Last Updated: 12-May-2025

workshop-epigenomics
No description available
https://nbisweden.github.io/workshop-epigenomics/
Last Updated: 26-Sep-2024

workshop-advanced-python
Workshop on advanced python lead by Sergio Netotea
https://nbisweden.github.io/workshop-advanced-python/
Last Updated: 04-May-2021

tissue-adherent-VMB
contains the code related to the article ““Distinct cervical tissue-adherent and luminal microbiome communities correlate with mucosal host gene expression and protein levels in Kenyan sex workers
https://nbisweden.github.io/tissue-adherent-VMB/
Last Updated: 11-Jun-2025

raukr
RaukR • R Beyond The Basics
http://raukr.nbis.se/
Last Updated: 08-Nov-2025

raukr-2023
NBIS Summer School • Advanced R for Bioinformatics
https://nbisweden.github.io/raukr-2023/
Last Updated: 04-Aug-2023

gdi.nbis.se
No description available
https://gdi.nbis.se/
Last Updated: 21-Mar-2024

easyshiny
Shiny web app builder for single-cell data
https://nbisweden.github.io/easyshiny/
Last Updated: 14-Apr-2023

Rcourse
R Programming Foundations for Life Scientists
https://nbisweden.github.io/Rcourse/
Last Updated: 07-Sep-2017

RaukR-2022
RaukR 2022 Teaching Materials
https://nbisweden.github.io/RaukR-2022/
Last Updated: 17-Jun-2022

RaukR-2019
RaukR 2019 teaching materials
https://nbisweden.github.io/RaukR-2019/
Last Updated: 14-Jun-2021

Grapevine
A natural language based workflow management system
https://nbisweden.github.io/Grapevine/
Last Updated: 09-Jun-2021