Single cell RNA-seq analysis course

Scilifelab Solna, Rooms Air & Fire, 2020-01-27 - 2020-01-29 (and 2020-01-30 optional day)

Important dates

Application open: September 13, 2019

Application deadline: December 16, 2019

Confirmation to accepted students: December 20, 2019

Course content

The first 3 days of the course will cover the basic steps in single cell RNAseq (scRNAseq) processing and data analysis. Topics covered will include:

On the fourth day we offer a “Bring your own data” day where you can analyse your data using the tools that you have discovered during the course, with TAs present to help you run the analyses and discuss your results. If you do not have your own data you can still select a public dataset of interest and analyse during that day.


How to apply

Fill in this application by December 16th and please indicate whether you are planning to participate on the optional day of January 30th.

Course fee

A course fee* of 2000 SEK will be invoiced to accepted participants. This includes lunches, coffee and course dinner.

*Please note that NBIS cannot invoice individuals

Entry requirements

Required for being able to follow the course and complete the computer exercises

Due to limited space the course can accommodate maximum of 25 participants. If we receive more applications, participants will be selected based on several criteria. Selection criteria include correct entry requirements, motivation to attend the course as well as gender and geographical balance.


Course schedule can be found here: schedule (TBA)


All exercises for the afternoon sessions can be found at Exercises. (TBA)

For working on Uppmax: to use the allocations we have for the course, please look here.

Precourse material

Please read carefully the Precourse material before the course start.

Address and travel suggestions

Travel Info

Course leaders

If you have any questions regarding the course, please email to Åsa Björklund or Paulo Czarnewski

Past courses

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