| Time | Topic | Instructor | Assistant |
|---|---|---|---|
17-Nov-2025MonUppsala | |||
| 09:00 - 09:30 | Welcome | Martin Dahlö | |
| 09:30 - 10:30 | Intro to Linux | Martin Dahlö | |
| 10:30 - 12:00 | Intro to Linux | Martin Dahlö | KGKarl Grönberg,SSSnaevar Sigurdsson,MPMartin Pippel |
| 12:00 - 13:00 | Lunch | ||
| 13:00 - 14:00 | Intro to HPC cluster | Martin Dahlö | |
| 14:00 - 17:00 | Intro to HPC cluster | Martin Dahlö | KGKarl Grönberg,SSSnaevar Sigurdsson |
18-Nov-2025TueUppsala | |||
| 09:00 - 09:30 | File types in Bioinformatics | Martin Dahlö | |
| 09:30 - 11:00 | File types in Bioinformatics | Martin Dahlö | JHJason Hill,KGKarl Grönberg |
| 11:00 - 12:00 | Better terminal experience | Martin Dahlö | |
| 12:00 - 13:00 | Lunch | ||
| 13:00 - 14:00 | Quality control | Marcel Martin | GDGuilherme Dias,JHJason Hill |
| 14:00 - 15:00 | Advanced Bash | Martin Dahlö | |
| 15:00 - 17:00 | Advanced Bash | Martin Dahlö | GDGuilherme Dias,KGKarl Grönberg |
19-Nov-2025WedUppsala | |||
| 09:00 - 11:45 | NGS tech & challenges | Adam Ameur & Johanna Lagensjö | |
| 11:45 - 12:00 | Lab tour | ||
| 12:00 - 13:00 | Lunch | ||
| 13:00 - 14:00 | Variant-calling workflow | Marcus Mayrhofer | |
| 14:00 - 17:00 | Variant-calling workflow | Diana Ekman | AJAnna Johansson,SDSebastian DiLorenzo |
| 18:00 - 21:00 | Course Dinner at Koh Phangan, Uppsala | ||
20-Nov-2025ThuUppsala | |||
| 09:00 - 09:30 | GATK best practices | Diana Ekman | |
| 09:30 - 12:00 | Variant-calling workflow | Diana Ekman | JHJason Hill,SDSebastian DiLorenzo |
| 12:00 - 13:00 | Lunch | ||
| 13:00 - 14:30 | RNA-Seq workflow | Roy Francis | |
| 14:30 - 17:00 | RNA-Seq workflow | Roy Francis | GDGuilherme Dias,SSSnaevar Sigurdsson |
21-Nov-2025FriUppsala | |||
| 09:00 - 12:00 | RNA-Seq workflow | Roy Francis | GDGuilherme Dias,SSSnaevar Sigurdsson |
| 12:00 - 13:00 | Lunch | ||
| 13:00 - 14:00 | Data management practices | Elin Kronander | |
| 14:00 - 14:15 | NBIS | Elin Kronander | |
Note
Breaks are planned for approximately 10:15 and 15:00 every day.
Date Venue Slides Lab Video