Breaks are planned for approximately 10:15 and 15:00 every day.
| Time |
Topic |
Instructor |
Assistant |
24-Mar-2025MonOnline |
| 09:00 - 09:30 |
Welcome |
Martin Dahlö |
|
| 09:30 - 10:30 |
Intro to Linux |
Martin Dahlö |
|
| 10:30 - 12:00 |
Intro to Linux |
Martin Dahlö |
MVMassimiliano Volpe,KLKatarina Lejonlid,SDSebastian DiLorenzo |
| 12:00 - 13:00 |
Lunch |
|
|
| 13:00 - 14:00 |
Intro to HPC cluster |
Martin Dahlö |
|
| 14:00 - 17:00 |
Intro to HPC cluster |
Martin Dahlö |
KLKatarina Lejonlid,YLYuan Li |
25-Mar-2025TueOnline |
| 09:00 - 09:30 |
File types in Bioinformatics |
Martin Dahlö |
|
| 09:30 - 11:00 |
File types in Bioinformatics |
Martin Dahlö |
MVMassimiliano Volpe,YLYuan Li |
| 11:00 - 12:00 |
Better terminal experience |
Martin Dahlö |
|
| 12:00 - 13:00 |
Lunch |
|
|
| 13:00 - 14:00 |
Quality control |
Malin Larsson |
LVLouella Vasquez,SDSebastian DiLorenzo |
| 14:00 - 15:00 |
Advanced Bash |
Martin Dahlö |
|
| 15:00 - 17:00 |
Advanced Bash |
Martin Dahlö |
LVLouella Vasquez,PPPaul Pyl |
26-Mar-2025WedOnline |
| 09:00 - 12:00 |
NGS tech & challenges |
Adam Ameur & Johanna Lagensjö |
|
| 12:00 - 13:00 |
Lunch |
|
|
| 13:00 - 14:00 |
Variant-calling workflow |
Markus Mayrhofer |
|
| 14:00 - 17:00 |
Variant-calling workflow |
Markus Mayrhofer |
MLMalin Larsson,DEDiana Ekman,SSSnaevar Sigurdsson |
27-Mar-2025ThuOnline |
| 09:00 - 09:30 |
GATK best practices |
Markus Mayrhofer |
|
| 09:30 - 12:00 |
Variant-calling workflow |
Markus Mayrhofer |
MLMalin Larsson,DEDiana Ekman,SSSnaevar Sigurdsson |
| 12:00 - 13:00 |
Lunch |
|
|
| 13:00 - 14:30 |
RNA-Seq workflow |
Roy Francis |
|
| 14:30 - 17:00 |
RNA-Seq workflow |
Roy Francis |
MVMassimiliano Volpe,PPPaul Pyl,SSSnaevar Sigurdsson |
28-Mar-2025FriOnline |
| 09:00 - 12:00 |
RNA-Seq workflow |
Roy Francis |
MVMassimiliano Volpe,PPPaul Pyl,SSSnaevar Sigurdsson |
| 12:00 - 13:00 |
Lunch |
|
|
| 13:00 - 14:00 |
Data management practices |
Stephan Nylander |
|
| 14:00 - 14:15 |
NBIS |
|
|
Date Venue Slides Lab Video