|
Time
|
Topic
|
Teacher
|
Assistant
|
|
28-Mar-2022MonOnline
|
|
09:00 - 09:30
|
Welcome and general introduction
|
Martin Dahlö
|
|
|
09:30 - 10:30
|
Intro to Linux
|
Martin Dahlö
|
|
|
10:30 - 12:00
|
Intro to Linux
|
Martin Dahlö
|
JS,JN,NG
|
|
12:00 - 13:00
|
Lunch
|
|
|
|
13:00 - 14:00
|
Intro to Uppmax
|
Martin Dahlö
|
|
|
14:00 - 17:00
|
Intro to Uppmax
|
Martin Dahlö
|
JS,JN,NG
|
|
29-Mar-2022TueOnline
|
|
09:00 - 09:30
|
File types in Bioinformatics
|
Martin Dahlö
|
|
|
09:30 - 11:00
|
File types in Bioinformatics
|
Martin Dahlö
|
EP,NG
|
|
11:00 - 12:00
|
Quality control
|
Malin Larsson
|
EP,JT
|
|
12:00 - 13:00
|
Lunch
|
|
|
|
13:00 - 13:15
|
Quality control wrap-up
|
Malin Larsson
|
|
|
13:15 - 14:15
|
NGS tech & challenges
|
Olga Vinnere Petterson
|
|
|
14:15 - 15:15
|
NGS tech & challenges
|
Olga Vinnere Petterson
|
|
|
15:15 - 17:00
|
NGS Pipelines
|
Adam Ameur
|
|
|
30-Mar-2022WedOnline
|
|
09:00 - 09:30
|
Better terminal experience
|
Martin Dahlö
|
|
|
09:30 - 10:30
|
Advanced Bash
|
Martin Dahlö
|
|
|
10:30 - 12:00
|
Advanced Bash
|
Martin Dahlö
|
JN,MH,NG
|
|
12:00 - 13:00
|
Lunch
|
|
|
|
13:00 - 13:45
|
Variant-calling workflow
|
Malin Larsson
|
|
|
14:00 - 17:00
|
Variant-calling workflow
|
Malin Larsson
|
DE,JA,MM
|
|
31-Mar-2022ThuOnline
|
|
09:00 - 12:00
|
Variant-calling workflow
|
Malin Larsson
|
DE,JA,MM
|
|
12:00 - 13:00
|
Lunch
|
|
|
|
13:00 - 17:00
|
RNA-Seq workflow
|
Dag Ahren
|
EP,JT,PA
|
|
01-Apr-2022FriOnline
|
|
09:00 - 12:00
|
RNA-Seq workflow
|
Dag Ahren
|
EP,JT,PA
|
|
12:00 - 13:00
|
Lunch
|
|
|
|
13:00 - 13:15
|
Presenting NBIS
|
Dag Ahrén
|
|
|
13:15 - 15:00
|
Open session
|
Dag Ahrén
|
ASM, JL,LM,MD,ML,RF,VVH
|
Date
Venue
Slides
Exercises
AA: Adam Ameur, ASM: Agata Smialowska, ASJ: Anders Sjölander, DA: Dag Ahren, DE: Diana Ekman, EP: Estelle Proux, JA: Juliana Assis, JL: Julie Lorent, JN: Johan Nylander, JS: John Sundh, JT: Jeanette Tångrot, LM: Lokesh Manoharan, MD: Martin Dahlö, MH: Mun-Gwan Hong, ML: Malin Larsson, MM: Markus Mayrhofer, NG: Niharika Gauraha, NR: Nima Rafati, OVP: Olga Vinnere Pettersson, PA: Prasoon Agarwal, RF: Roy Francis, SR: Susanne Reinsbach, VVH: Vincent van Hoef
