|
Time
|
Topic
|
Teacher
|
Assistant
|
|
22-Nov-2021MonOnline
|
|
09:00 - 09:30
|
Welcome and general introduction
|
Martin Dahlö
|
|
|
09:30 - 10:30
|
Intro to Linux
|
Martin Dahlö
|
AS,IH,LS,SR
|
|
10:30 - 12:00
|
Intro to Linux
|
Martin Dahlö
|
AS,IH,LS,SR
|
|
12:00 - 13:00
|
Lunch
|
|
|
|
13:00 - 14:00
|
Intro to Uppmax
|
Martin Dahlö
|
AS,IH,LS,SR
|
|
14:00 - 17:00
|
Intro to Uppmax
|
Martin Dahlö
|
AS,IH,LS,SR
|
|
23-Nov-2021TueOnline
|
|
09:00 - 09:30
|
File types in Bioinformatics
|
Martin Dahlö
|
AS,IH,SR
|
|
09:30 - 11:00
|
File types in Bioinformatics
|
Martin Dahlö
|
AS,IH,SR
|
|
11:00 - 12:00
|
Quality control
|
Malin Larsson
|
AS,IH,SR
|
|
12:00 - 13:00
|
Lunch
|
|
|
|
13:00 - 13:15
|
Quality control wrap-up
|
Malin Larsson
|
|
|
13:15 - 13:45
|
Better terminal experience
|
Martin Dahlö
|
|
|
13:45 - 14:45
|
Advanced Bash
|
Martin Dahlö
|
|
|
14:45 - 17:00
|
Advanced Bash
|
Martin Dahlö
|
AS,IH,SR
|
|
24-Nov-2021WedOnline
|
|
09:00 - 10:00
|
NGS tech & challenges
|
Olga Vinnere Petterson
|
|
|
10:00 - 11:00
|
NGS tech & challenges
|
Olga Vinnere Petterson
|
|
|
11:00 - 12:00
|
NGS Pipelines
|
Adam Ameur
|
|
|
12:00 - 13:00
|
Lunch
|
|
|
|
13:00 - 13:45
|
Variant-calling workflow
|
Malin Larsson
|
|
|
14:00 - 17:00
|
Variant-calling workflow
|
Malin Larsson
|
AJ,DE,JT
|
|
25-Nov-2021ThuOnline
|
|
09:00 - 12:00
|
Variant-calling workflow
|
Malin Larsson
|
AJ,DE,JT
|
|
12:00 - 13:00
|
Lunch
|
|
|
|
13:00 - 17:00
|
RNA-Seq workflow
|
Dag Ahren
|
JL,LS,NR
|
|
26-Nov-2021FriOnline
|
|
09:00 - 12:00
|
RNA-Seq workflow
|
Dag Ahren
|
JL,LS,NR
|
|
12:00 - 13:00
|
Lunch
|
|
|
|
13:00 - 13:15
|
Presenting NBIS
|
Dag Ahrén
|
|
|
13:15 - 15:00
|
Open session
|
Dag Ahrén
|
AA,MD,ML,OP,RF
|
Date
Venue
Slides
Exercises
AA: Adam Ameur, AJ: Anna Johansson, AS: Anders Sjölander, DA: Dag Ahren, DE: Diana Ekman, IH: Ingrid Hyltander, JT: Jeanette Tångrot, JL: Julie Lorent, LS: Lucile Soler, ML: Malin Larsson, MD: Martin Dalhö, NR: Nima Rafati, OP: Olga Petterson, RF: Roy Francis, SR: Susanne Reinsbach
