Note: The schedule and materials are not final and are subject to change.

Time Topic Teacher

13-Mar-2023MonTrippelrummet

09:00 - 09:15 Welcome Johan Reimegård
09:15 - 10:00 RNA Introduction Johan Reimegård
10:00 - 10:30 Coffee Break
10:30 - 12:00 RNA-Seq Introduction Johan Reimegård
12:00 - 13:00 Lunch
13:00 - 14:00 Pre-alignment QC Johan Reimegård
14:00 - 14:30 Coffee Break
14:30 - 16:00 Mapping Johan Reimegård

14-Mar-2023TueTrippelrummet

09:00 - 10:00 Post-alignment QC Johan Reimegård
10:00 - 10:30 Coffee Break
10:30 - 12:00 Quantification Johan Reimegård
12:00 - 13:00 Lunch
13:00 - 14:00 Data preprocessing Nima Rafati
14:00 - 14:30 Coffee Break
15:30 - 16:00 Annotation data Nima Rafati

15-Mar-2023WedTrippelrummet

09:00 - 10:00 PCA Paulo Czarnewski
10:00 - 10:30 Coffee Break
10:30 - 12:00 Hierarchical Clustering Paulo Czarnewski
12:00 - 13:00 Lunch
13:00 - 14:00 DGE Julie Lorent
14:00 - 14:30 Coffee Break
15:00 - 16:00 GSA & GSEA Paulo Czarnewski

16-Mar-2023ThuTrippelrummet

09:00 - 10:00 DGE advanced Paulo Czarnewski
10:00 - 10:30 Coffee Break
10:30 - 11:30 Online Repositories Paulo Czarnewski
11:30 - 12:00 Reading Bioinformatics Paulo Czarnewski
12:00 - 13:00 Lunch
13:00 - 14:00 Pseudoaligners Johan Reimegård
14:00 - 14:30 Coffee Break
14:30 - 15:30 Free Exercises
15:30 - 16:00 Conclusion Johan Reimegård

Date Venue Slides Exercises