5  Closing

Analyses have been completed.

5.1 Checklist to close a project

• The results have been discussed with the team.
• README.md in the root of the project is up to date.
• Sequence deliveries are in data/deliveries.
• Raw data is in data/raw-data on rackham.
• Analysis results are in data/outputs on rackham.
• Frozen outputs/results are in data/frozen on rackham.
• analyses/History.md is up-to-date with the relationship between analyses.
• Analysis folders names include where the analysis was run.
• Git has been used to track the latest executed version of the analyses.
• All code used is present in the repository.
• An up-to-date finalized report is present in docs/report.
• The Github repository is up-to-date with the latest tracked files.
• All files have data provenance (e.g. where data was downloaded from).
• If this is a BGE Project, the information has been submitted to the BGE tracking tool and is up-to-date (Contact: Henrik).
• Nextflow cache has been cleaned.
• Results have been appropriately archived.

5.2 Checklist for removing data from HPC

• Raw data has been uploaded to/published in a(n external) repository
• PI has been offered/reminded to download raw data locally, and has responded
• All data have been checked to be in the latest version, and updates (e.g. to an assembly) have been made when applicable
• Removal decision has been made and approved by all parties (NBIS and PI)
• Intermediate and temporary analysis files have been removed
• Data has been removed