Welcome to NBIS GitHub pages
If you are looking for a specific website, you need a URL in this format: nbisweden.github.io/repo. Here is a list of some of our most recently visited GitHub pages:
AGAT
Another Gtf/Gff Analysis Toolkit https://nbisweden.github.io/AGAT/
https://nbisweden.github.io/AGAT/
Last Updated: 19-Dec-2025
workshop-scRNAseq
Single cell RNA sequencing analysis course
https://nbisweden.github.io/workshop-scRNAseq/
Last Updated: 26-Nov-2025
workshop-RNAseq
Workshop • Analysis of RNA-seq data
https://nbisweden.github.io/workshop-RNAseq/
Last Updated: 15-Mar-2024
workshop_omics_integration
Workshop in omics integration and systems biology
https://nbisweden.github.io/workshop_omics_integration/
Last Updated: 21-Oct-2024
sauron
Website is at:
https://nbisweden.github.io/sauron/
Last Updated: 28-Apr-2021
workshop_omicsint_ISMBECCB
Repository for the ISMB/ECCB workshop ““A practical introduction to multi-omics integration and network analysis
https://nbisweden.github.io/workshop_omicsint_ISMBECCB/
Last Updated: 23-Jul-2021
SCoRe_user_doc
SCoRe user documentation
https://docs.score.nbis.se/
Last Updated: 02-Jan-2026
workshop-reproducible-research
NBIS/Elixir course: Tools for Reproducible Research
https://nbisweden.github.io/workshop-reproducible-research/
Last Updated: 22-Oct-2025
workshop-data-visualization-r
Materials for NBIS workshop on advanced data visualization
https://nbisweden.github.io/workshop-data-visualization-r/
Last Updated: 16-Dec-2025
raukr-2025
Raukr 2025 • NBIS Summer School • R Beyond the Basics
https://nbisweden.github.io/raukr-2025/
Last Updated: 23-Jun-2025
single-cell_sib_scilifelab_2021
SciLifeLab SIB Summer School for Advanced topics in Single Cell Omics. Site: https://nbisweden.github.io/single-cell_sib_scilifelab_2021/
https://nbisweden.github.io/single-cell_sib_scilifelab_2021/
Last Updated: 19-Sep-2021
genecovr
Gene body coverage in assemblies in R
https://nbisweden.github.io/genecovr/
Last Updated: 21-Dec-2023
single-cell_sib_scilifelab
SIB/Scilifelab autumn school in single cell omics 2019.
https://nbisweden.github.io/single-cell_sib_scilifelab/
Last Updated: 28-Oct-2019
workshop-r
Workshop • R Programming Foundations for Life Scientists • 5 days
https://nbisweden.github.io/workshop-r/
Last Updated: 04-Dec-2025
workshop-ngsintro
Workshop • Intro to Bioinformatics using NGS data • 5 days
https://nbisweden.github.io/workshop-ngsintro/
Last Updated: 27-Nov-2025
module-organising-data-dm-practices
No description available
https://nbisweden.github.io/module-organising-data-dm-practices/
Last Updated: 28-Mar-2025
bp-sweden-web
Website for BigPicture Sweden
http://bp.nbis.se/
Last Updated: 16-Dec-2025
sda-uppmax-integration
No description available
https://nbisweden.github.io/sda-uppmax-integration/
Last Updated: 17-Dec-2025
module-open-science-dm-practices
Open Science module for Data Management course (carpentries style)
https://nbisweden.github.io/module-open-science-dm-practices/
Last Updated: 05-Sep-2025
rda-gorc-im
GORC International Model visualisation
https://nbisweden.github.io/rda-gorc-im/
Last Updated: 15-Dec-2025
beacon-api-tests
Compliance tester and test cases for Beacons.
https://nbisweden.github.io/beacon-api-tests/
Last Updated: 25-Jun-2020
assembly-project-template
This is a template for all assembly projects. Please read the instructions below on how to use it.
https://nbisweden.github.io/assembly-project-template/
Last Updated: 10-Dec-2025
workshop-snakemake-byoc
No description available
https://nbisweden.github.io/workshop-snakemake-byoc/
Last Updated: 03-Jun-2024
workshop-genome_annotation_elixir
genome annotation course within ELIXIR
https://nbisweden.github.io/workshop-genome_annotation_elixir/
Last Updated: 07-May-2021
teaching_literature_club
NBIS’ teaching literature club
https://nbisweden.github.io/teaching_literature_club/
Last Updated: 22-Dec-2025
raukr-2026
Raukr 2026 • NBIS Summer School • R Beyond the Basics
https://nbisweden.github.io/raukr-2026/
Last Updated: 12-Dec-2025
raukr-2024
NBIS Summer School • Advanced R for Bioinformatics
https://nbisweden.github.io/raukr-2024/
Last Updated: 26-May-2025
elixir_evaluation_evaluation
An evaluation of the ELIXIR course evaluation
https://nbisweden.github.io/elixir_evaluation_evaluation/
Last Updated: 03-Jan-2026
bp-landing-pages
Bigpicture project dataset landing page generator
https://nbisweden.github.io/bp-landing-pages/
Last Updated: 17-Dec-2025
workshop-mlbiostatistics
Geared towards life scientists wanting to be able to understand and use basic statistical and machine learning methods
https://nbisweden.github.io/workshop-mlbiostatistics/
Last Updated: 15-Dec-2025
raukrtemplate
Presentation & lab RMarkdown templates for RaukR course
https://nbisweden.github.io/raukrtemplate/
Last Updated: 19-Apr-2022
module-versioning-dm-practices
No description available
https://nbisweden.github.io/module-versioning-dm-practices/
Last Updated: 28-Mar-2025
module-rstudio-intro-dm-practices
No description available
https://nbisweden.github.io/module-rstudio-intro-dm-practices/
Last Updated: 17-Apr-2023
module-metadata-dm-practices
Metadata module for Data Management course (carpentries style)
https://nbisweden.github.io/module-metadata-dm-practices/
Last Updated: 28-Mar-2025
htsget-rs-helm
This repository hosts Helm charts for deploying the rust implementation of htsget
https://nbisweden.github.io/htsget-rs-helm/
Last Updated: 17-Sep-2024
ejprd-DistributedAnalysisDemonstrator
Local fork used by NBIS staff contributing to EJP-RD
https://nbisweden.github.io/ejprd-DistributedAnalysisDemonstrator/
Last Updated: 24-Jul-2024
easyshiny
Shiny web app builder for single-cell data
https://nbisweden.github.io/easyshiny/
Last Updated: 14-Apr-2023
canvas-integrations
No description available
https://nbisweden.github.io/canvas-integrations/
Last Updated: 11-Oct-2021
bp-upload-test
For showing results of the uploading tests to the Bigpicture staging
https://nbisweden.github.io/bp-upload-test/
Last Updated: 26-Sep-2025
beacon-helm
No description available
https://nbisweden.github.io/beacon-helm/
Last Updated: 15-Nov-2022
aida-datahub-docs
Documentation for AIDA datahub services
http://docs.datahub.aida.scilifelab.se/
Last Updated: 09-Dec-2025
a_johansson_2020
Åsa Johansson partner project 2020
https://nbisweden.github.io/a_johansson_2020/
Last Updated: 20-Oct-2023
Rcourse
R Programming Foundations for Life Scientists
https://nbisweden.github.io/Rcourse/
Last Updated: 07-Sep-2017
RaukR-2019
RaukR 2019 teaching materials
https://nbisweden.github.io/RaukR-2019/
Last Updated: 14-Jun-2021
Grapevine
A natural language based workflow management system
https://nbisweden.github.io/Grapevine/
Last Updated: 09-Jun-2021
Containerized-Compute-Helm-Charts
Fork for working on CC Helm charts
https://nbisweden.github.io/Containerized-Compute-Helm-Charts/
Last Updated: 28-Aug-2024