Coffee breaks are planned for approximately 10:00 and 14:30 every day.
| Time |
Topic |
Instructor |
Assistant |
18-Mar-2024MonZoom |
| 09:00 - 09:30 |
Welcome |
Martin Dahlö |
|
| 09:30 - 10:30 |
Intro to Linux |
Martin Dahlö |
|
| 10:30 - 12:00 |
Intro to Linux |
Martin Dahlö |
CKCormac Kinsella,VKVarsith Konda,YLYuan Li |
| 12:00 - 13:00 |
Lunch |
|
|
| 13:00 - 14:00 |
Intro to Uppmax |
Martin Dahlö |
|
| 14:00 - 17:00 |
Intro to Uppmax |
Martin Dahlö |
CKCormac Kinsella,YLYuan Li |
19-Mar-2024TueZoom |
| 09:00 - 09:30 |
File types in Bioinformatics |
Martin Dahlö |
|
| 09:30 - 11:00 |
File types in Bioinformatics |
Martin Dahlö |
CKCormac Kinsella,YLYuan Li |
| 11:00 - 12:00 |
Better terminal experience |
Martin Dahlö |
|
| 12:00 - 13:00 |
Lunch |
|
|
| 13:00 - 14:00 |
Quality control |
Malin Larsson |
CKCormac Kinsella,EBEmre Balsever |
| 14:00 - 15:00 |
Advanced Bash |
Martin Dahlö |
|
| 15:00 - 17:00 |
Advanced Bash |
Martin Dahlö |
CKCormac Kinsella,VKVarsith Konda |
20-Mar-2024WedZoom |
| 09:00 - 12:00 |
NGS tech & challenges |
Adam Ameur & Johanna Lagensjö |
|
| 12:00 - 13:00 |
Lunch |
|
|
| 13:00 - 14:00 |
Variant-calling workflow |
Malin Larsson |
|
| 14:00 - 17:00 |
Variant-calling workflow |
Malin Larsson |
CKCormac Kinsella,JTJeanette Tångrot,MVMassimiliano Volpe |
21-Mar-2024ThuZoom |
| 09:00 - 09:30 |
GATK best practices |
Malin Larsson |
|
| 09:30 - 12:00 |
Variant-calling workflow |
Malin Larsson |
CKCormac Kinsella,MVMassimiliano Volpe |
| 12:00 - 13:00 |
Lunch |
|
|
| 13:00 - 14:00 |
RNA-Seq workflow |
Roy Francis |
|
| 14:00 - 17:00 |
RNA-Seq workflow |
Roy Francis |
CKCormac Kinsella,FRFariba Roshanzamir,JTJeanette Tångrot |
22-Mar-2024FriZoom |
| 09:00 - 12:00 |
RNA-Seq workflow |
Roy Francis |
CKCormac Kinsella,FRFariba Roshanzamir,JTJeanette Tångrot |
| 12:00 - 13:00 |
Lunch |
|
|
| 13:00 - 14:00 |
Data management practices |
Elin Kronander / Stephan Nylinder |
|
| 14:00 - 14:15 |
NBIS |
Malin Larsson |
|
Date Venue Slides Lab Video