Schedule

The schedule is intended for when following a live workshop. If you are following this at your own pace, see Contents
Note

Coffee breaks are planned for approximately 10:00 and 14:30 every day.

Time Topic Instructor Assistant

18-Mar-2024MonZoom

09:00 - 09:30 Welcome Martin Dahlö
09:30 - 10:30 Intro to Linux Martin Dahlö
10:30 - 12:00 Intro to Linux Martin Dahlö CKCormac Kinsella,VKVarsith Konda,YLYuan Li
12:00 - 13:00 Lunch
13:00 - 14:00 Intro to Uppmax Martin Dahlö
14:00 - 17:00 Intro to Uppmax Martin Dahlö CKCormac Kinsella,YLYuan Li

19-Mar-2024TueZoom

09:00 - 09:30 File types in Bioinformatics Martin Dahlö
09:30 - 11:00 File types in Bioinformatics Martin Dahlö CKCormac Kinsella,YLYuan Li
11:00 - 12:00 Better terminal experience Martin Dahlö
12:00 - 13:00 Lunch
13:00 - 14:00 Quality control Malin Larsson CKCormac Kinsella,EBEmre Balsever
14:00 - 15:00 Advanced Bash Martin Dahlö
15:00 - 17:00 Advanced Bash Martin Dahlö CKCormac Kinsella,VKVarsith Konda

20-Mar-2024WedZoom

09:00 - 12:00 NGS tech & challenges Adam Ameur & Johanna Lagensjö
12:00 - 13:00 Lunch
13:00 - 14:00 Variant-calling workflow Malin Larsson
14:00 - 17:00 Variant-calling workflow Malin Larsson CKCormac Kinsella,JTJeanette Tångrot,MVMassimiliano Volpe

21-Mar-2024ThuZoom

09:00 - 09:30 GATK best practices Malin Larsson
09:30 - 12:00 Variant-calling workflow Malin Larsson CKCormac Kinsella,MVMassimiliano Volpe
12:00 - 13:00 Lunch
13:00 - 14:00 RNA-Seq workflow Roy Francis
14:00 - 17:00 RNA-Seq workflow Roy Francis CKCormac Kinsella,FRFariba Roshanzamir,JTJeanette Tångrot

22-Mar-2024FriZoom

09:00 - 12:00 RNA-Seq workflow Roy Francis CKCormac Kinsella,FRFariba Roshanzamir,JTJeanette Tångrot
12:00 - 13:00 Lunch
13:00 - 14:00 Data management practices Elin Kronander / Stephan Nylinder
14:00 - 14:15 NBIS Malin Larsson

Date Venue Slides Lab Video