Schedule

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OBS! Schedule is preliminary and may be subject to changes!

Lecture slides will be provided as links as they get completed.

Monday 30th of January

Time	Description	Lecturer
09.00	Course introduction	Åsa & Paulo
09.30	scRNAseq methodologies and ESCG platform	Henrik Gezelius
10.30	Break
11.00	scRNAseq Quality Control	Åsa Björklund
12.00	Lunch
13.00	Intro to exercises	Åsa Björklund
13.30	Exercises: Quality control	Åsa, Paulo, Jakub
15.00	Break
15.30	Data normalization	Åsa Björklund
16.30	Wrap up session	Åsa & Paulo

Tuesday 31st of January

Time	Description	Lecturer
09.00	Dimensionality reduction	Paulo Czarnewski
10.00	Break
10.30	Exercises: Dimensionality reduction	Åsa, Paulo
12.00	Lunch
13.00	Batch correction + Data integration	Paulo Czarnewski
14.00	Exercises: Data integration	Åsa, Paulo
15.00	Break
15.30	Clustering techniques and scRNAseq toolkits	Åsa Björklund
16.30	Wrap up session	Åsa & Paulo
18.00	Course Dinner (Shanti touch of Bengali)

Wednesday 1st of February

Time	Description	Lecturer
09.00	Exercises: Clustering	Åsa, Paulo
10.00	Break
10.30	Invited Lecturer: Single cell Epigenetics	Jakub Westholm
12.00	Lunch
13.00	Differential gene expression	Vincent van Hoef
14.00	Gene Set Analysis	Paulo Czarnewski
14.30	Break
15.00	Exercises: Differential expression	Åsa, Paulo
16.30	Wrap up session	Åsa & Paulo

Thursday 2nd of February

Time	Description	Lecturer
09.00	Invited Lecture: Celltype prediction	Ahmed Mahfouz
10.00	Break
10.30	Exercises: Celltype prediction	Åsa, Paulo
12.00	Lunch
13.00	Invited Lecture: Spatial Transcriptomics	Alma Andersson
14.00	Exercises: Spatial Transcriptomics	Åsa, Paulo
15.00	Break
16.30	Wrap up session	Åsa & Paulo

Friday 3rd of February

Time	Description	Lecturer
9.00	Trajectory inference analysis	Paulo Czarnewski
10.00	Break
10.15	Exercises: Trajectory inference	Åsa, Paulo
11.30	Summary of exercises	Åsa & Paulo
12.00	Lunch
13.00	Wrap up and Course Summary	Åsa & Paulo