Content
We will be covering the following broad topics:
- reproducible research in R,
- using git/github and Rstudio to track code development,
- R code style guidelines,
- loops,
apply*
functions and vectorization in R, - writing own functions – best practices
- understanding and using the system of R classes: S3, S4, and R6,
- anatomy of an R package: writing your own package from scratch,
- code debugging, profiling and optimisation.
- working with
tidyverse
family of packages, - efficient use of
%>%
pipes, - elements of functional programming in R using
purr
- using the language of graphics,
ggplot2
, - working with maps (
ggmap2
), - interactive plots,
- introduction to
shiny
web applications, - biostatistical models in R,
- statistical and machine learning in R,
- introduction to deep learning using R and
keras
, - introduction to Bioconductor,