Schedule

Click the heading of a topic to see the lecture slides or lab instructions.

Wednesday 14th

Room: NA326
09.00-09.15 Lecture: General introduction (Jeanette Tångrot)
09.15-10.15 Lecture: RNA-seq introduction (Jeanette Tångrot)
Coffee
10.30-11.15 Lecture: RNA-seq quality control (HTML, PDF) (Roy Francis)
11.15-12.00 Lecture: Short read mapping programs (HTML, PDF) (Roy Francis)
12.00-13.00 Lunch at Universum
13.00-14.00 Lecture: Data management (Niclas Jareborg)
14.00-17.00 Exercise: Suggested exercises are sections Quality control laboratory and Mapping reads (Roy Francis, Paulo Czarnewski, Viktor Jonsson, Dag Ahrén)

Thursday 15th

Room: NA326
09:00-10.00 Lecture: Differential expression analysis (Dag Ahrén)
Coffee
10.15-11.00 Lecture: Gene-set analysis and data integration (Viktor Jonsson)
11.00-12.00 Exercise: Suggested exercises are sections Differential expression analysis and Gene set analysis (Jeanette Tångrot, Paulo Czarnewski, Dag Ahrén, Viktor Jonsson)
12.00-13.00 Lunch at Universum
13:00-14.00 Lecture: RNA-seq pipeline (Phil Ewels)
14.00-17.00 Exercise: Suggested exercises are sections Differential expression analysis and Gene set analysis (Jeanette Tångrot, Paulo Czarnewski, Phil Ewels, Viktor Jonsson)
18.00- Course dinner

Friday 16th

Room: NA332
09.00-09.30 Lecture: Genome annotation and short read assembly (Lucile Soler)
09:30-12:00 Exercise:Short read assembly (Lucile Soler, Jeanette Tångrot, Dag Ahrén) including coffee
12.00-13.00 Lunch at Universum
13.30-14.00 Lecture: Functional annotation of transcripts (Lucile Soler)
14.00-15.00 Exercise:Functional annotation of transcripts (Lucile Soler, Jeanette Tångrot, Dag Ahrén) including coffee
15.45-16.00 Lecture: Summary (Jeanette Tångrot)
16.00-16.15 Hand in feedback and evaluation of the course