Licenses

Instructional Material

The instructional content of this lesson is an adaptation of previous works and is made available under CC-BY 4.0 by NBIS - National Bioinformatics Infrastructure Sweden 2020–2023.

Adaptation of lesson Collaborating and sharing using GitHub without command line
Licensed under CC-BY 4.0 2020–2023 by CodeRefinery contributors

Using a rebranded fork of The Carpentries style
Licensed under CC-BY 4.0 and MIT license 2016–2023 by Software Carpentry

The following is a human-readable summary of (and not a substitute for) the full legal text of the CC BY 4.0 license.

You are free:

  • to Share—copy and redistribute the material in any medium or format
  • to Adapt—remix, transform, and build upon the material

for any purpose, even commercially.

The licensor cannot revoke these freedoms as long as you follow the license terms.

Under the following terms:

  • Attribution—You must give appropriate credit (mentioning that your work is derived from work that is Copyright © NBIS - National Bioinformatics Infrastructure Sweden, © CodeRefinery contributors and © Software Carpentry respectively and, where practical, linking to the corresponsing websites https://nbis.se, https://coderefinery.org/ and https://software-carpentry.org/), provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use.

  • No additional restrictions—You may not apply legal terms or technological measures that legally restrict others from doing anything the license permits. With the understanding that:

    • You do not have to comply with the license for elements of the material in the public domain or where your use is permitted by an applicable exception or limitation.
    • No warranties are given. The license may not give you all of the permissions necessary for your intended use. For example, other rights such as publicity, privacy, or moral rights may limit how you use the material.

Figures and example data

The figures and example data referenced in this lesson are licensed as outlined in the table below:

Figure / example data License

fig/creating-using-web/branches-click.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-web/branches-overview.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-web/commit-experiment-branch.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-web/commits-browse.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-web/commits-example.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-web/create-branch.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-web/created.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-web/edit-file-preview.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-web/form.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-web/network.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-web/new-file-buttons.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-web/new-file-commit.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-web/new-file-editor.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-web/new-top-left.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-web/new-top-right.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-desktop/after-pull.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-desktop/before-create.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-desktop/creating.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-desktop/diff-before-commit.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-desktop/fetch-origin.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-desktop/network.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-desktop/publish.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-desktop/pull-origin.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-desktop/switch-branch.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/contributing/branch-protection.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/contributing/conflict-edit-1.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/contributing/conflict-edit-2.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/contributing/conflict-pull-request.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/contributing/conflict-resolution.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/contributing/invite-collaborators.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/contributing/propose-file-change.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/contributing/pull-request-form.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/basics/commits-and-branches.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/basics/commits-snapshots.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/basics/file-view.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/basics/history-demo.png

GitHub website with annotations by NBIS, GitHub website screenshot used to teach about GitHub, https://github.com/logos

fig/creating-using-web/choosealicense.png

Choosealicense.com website by GitHub, CC-BY 3.0, https://creativecommons.org/licenses/by/3.0/

data/samples_metadata_lesson.csv

Artificial data created by NBIS derived from publicaly available research data deposited in the European Nucleotide Archive (ENA) at EMBL-EBI under accession number PRJEB42601 (https://identifiers.org/ena.embl:PRJEB42601).

module-versioning-dm-practice.pdf

Presentation CC BY 4.0 by NBIS, https://creativecommons.org/licenses/by/4.0/

Software

Except where otherwise noted, the example programs and other software provided by Software Carpentry and Data Carpentry are made available under the OSI-approved MIT license.

Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the “Software”), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:

The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.

THE SOFTWARE IS PROVIDED “AS IS”, WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

Trademark

“Software Carpentry” and “Data Carpentry” and their respective logos are registered trademarks of Community Initiatives.