Instructional Material
The instructional content of this lesson is an adaptation of previous works and is made available under CC-BY 4.0 by NBIS - National Bioinformatics Infrastructure Sweden 2020–2023.
Adaptation of lesson Data Analysis and Visualization in R for Ecologists
Licensed under CC-BY 4.0 2018–2023
by The Carpentries
Licensed under CC-BY 4.0 2016–2018
by Data Carpentry
Adaptation of lesson R for Reproducible Scientific Analysis
Licensed under CC-BY 4.0 2018–2023
by The Carpentries
Licensed under CC-BY 4.0 2016–2018
by Software Carpentry Foundation
Using a rebranded fork of The Carpentries style.
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Figures and example data
The figures and example data referenced in this lesson are licensed as outlined in the table below:
Figure / example data | License |
---|---|
Illustration CC-BY 4.0 by NBIS, https://creativecommons.org/licenses/by/4.0/ | |
A MiSeq from Illumina CC-0 by Konrad Förstner, https://creativecommons.org/publicdomain/zero/1.0/ | |
Data Analysis and Visualization in R for Ecologists, CC-BY 4.0 by Data Carpentry, https://creativecommons.org/licenses/by/4.0/ | |
Data Analysis and Visualization in R for Ecologists, CC-BY 4.0 by Data Carpentry, https://creativecommons.org/licenses/by/4.0/ | |
Data Analysis and Visualization in R for Ecologists, CC-BY 4.0 by Data Carpentry, https://creativecommons.org/licenses/by/4.0/ | |
Data Analysis and Visualization in R for Ecologists, CC-BY 4.0 by Data Carpentry, https://creativecommons.org/licenses/by/4.0/ | |
RStudio screenshot by NBIS, used to teach about RStudio, https://www.rstudio.com/about/trademark/ | |
RStudio screenshot by Data carpentry, used to teach about RStudio, https://www.rstudio.com/about/trademark/ | |
Data Analysis and Visualization in R for Ecologists, CC-BY 4.0 by Data Carpentry, https://datacarpentry.org/R-ecology-lesson | |
Artificial data derived from original data made available through the study “COVseq is a cost-effective workflow for mass-scale SARS-CoV-2 genomic surveillance” in Nature Communications 12: 3903 (2021), DOI: https://doi.org/10.1038/s41467-021-24078-9. Original data available under accession number PRJEB42601 at EMBL-EBI (https://identifiers.org/ena.embl:PRJEB42601). | |
Artificial data derived from original data made available through the study “COVseq is a cost-effective workflow for mass-scale SARS-CoV-2 genomic surveillance” in Nature Communications 12: 3903 (2021), DOI: https://doi.org/10.1038/s41467-021-24078-9. Original data available under accession number PRJEB42601 at EMBL-EBI (https://identifiers.org/ena.embl:PRJEB42601). | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
fig/rmd-05-outcome-counts-with-right-labels-xfont-size-1.png |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0/ | |
Diagram generated using the ggplot2 R-package, CC-0 by NBIS, https://creativecommons.org/publicdomain/zero/1.0///identifiers.org/ena.embl:PRJEB42601). |
Software
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