summarizeGeneBodyCoverage

summarizeGeneBodyCoverage

Usage

summarizeGeneBodyCoverage(x, min.coverage = seq(0, 1, 0.05), min.match = 0.9)

Arguments

x

AlignmentPairs or DataFrame object

min.coverage

coverage cutoffs to apply to transcripts

min.match

filter out hits with fraction matching bases less than min.match