R/AllGenerics.R
R/methods-AlignmentPairs-class.R
matches-methods.Rd
Get matches from an alignment.
Get mismatches from an alignment.
Get matches that are parts of repeats from an alignment.
matches(x, ...) mismatches(x, ...) repmatches(x, ...) # S4 method for AlignmentPairs matches(x) # S4 method for AlignmentPairs mismatches(x) # S4 method for AlignmentPairs repmatches(x)
Object representation of a sequence alignment
Additional argument list
numeric