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countSubjectsByCoverage

Source: R/methods-AlignmentPairs-class.R
countSubjectsByCoverage.Rd

countSubjectsByCoverage

Usage

countSubjectsByCoverage(
  x,
  min.coverage = seq(0.25, 1, 0.25),
  min.match = 0.9,
  nmax = 5
)

Arguments

x

AlignmentPairs or DataFrame object

min.coverage

coverage cutoffs to apply to transcripts

min.match

filter out hits with fraction matching bases less than min.match

nmax

maximum number of subjects to count