Time Topic Teacher Assistant

27-Jan-2020MonE10:1309

09:00 - 09:15 Welcome Björn Nystedt
09:15 - 10:00 Intro to Linux Martin Dahlö
10:00 - 10:15 Coffee Break
10:15 - 12:00 Intro to Linux Martin Dahlö MD, JD, PE
12:00 - 13:00 Lunch
13:00 - 14:00 Intro to Uppmax Björn Viklund
14:00 - 15:00 Intro to Uppmax Björn Viklund JD, PE
15:00 - 15:15 Coffee Break
15:15 - 17:00 Intro to Uppmax Björn Viklund JD, PE

28-Jan-2020TueE10:1309

09:00 - 09:30 File types in Bioinformatics Martin Dahlö
09:30 - 10:00 File types in Bioinformatics Martin Dahlö AS, JD, PE
10:00 - 10:15 Coffee Break
10:15 - 12:00 Better terminal experience Martin Dahlö
12:00 - 13:00 Lunch
13:00 - 14:00 Advanced Linux Martin Dahlö
14:00 - 15:00 Advanced Linux Martin Dahlö AS, JD, PE
15:00 - 15:15 Coffee Break
15:15 - 17:00 Advanced Linux Martin Dahlö AS, JD, PE

29-Jan-2020WedE10:1309

09:00 - 10:00 NGS Overview Olga Petterson
10:00 - 10:15 Coffee Break
10:15 - 11:00 NGS Overview Olga Petterson
11:00 - 12:00 NGS pipeline Adam Ameur
12:00 - 13:00 Lunch
13:00 - 14:00 Variant-calling workflow Malin Larsson
14:00 - 15:00 Variant-calling workflow Malin Larsson AJ, PE, MD
15:00 - 15:15 Coffee Break
15:15 - 17:00 Variant-calling workflow Malin Larsson AJ, PE, MD

30-Jan-2020ThuE10:1309

09:00 - 10:00 Variant-calling workflow Malin Larsson AJ, PE
10:00 - 10:15 Coffee Break
10:15 - 12:00 Variant-calling workflow Malin Larsson AJ, PE
12:00 - 13:00 Lunch
13:00 - 14:00 Data management Niclas Jareborg
14:00 - 15:00 Intro to RNA-Seq Roy Francis
15:00 - 15:15 Coffee Break
15:15 - 17:00 RNA-Seq workflow Roy Francis PE, BS, NR

31-Jan-2020FriE10:1309

09:00 - 10:00 RNA-Seq workflow Roy Francis
10:00 - 10:15 Coffee Break
10:15 - 12:00 RNA-Seq workflow Roy Francis
12:00 - 13:00 Lunch
13:00 - 14:00 NBIS and services Björn Nystedt
14:00 - 15:00 Open session Roy Francis PE, JD, AJ, OP

Date Room number Slides Lab exercises

MD: Martin Dalhö, JD: Jacques Dainat, PE: Payam Emami, AS: Anders Sjölander, AJ: Anna Johansson, BS: Bengt Sennblad, NR: Nima Rafati, OP: Olga Petterson.