Time | Topic | Teacher | Assistant |
---|---|---|---|
27-Jan-2020MonE10:1309 |
|||
09:00 - 09:15 | Welcome | Björn Nystedt | |
09:15 - 10:00 | Intro to Linux | Martin Dahlö | |
10:00 - 10:15 | Coffee Break | ||
10:15 - 12:00 | Intro to Linux | Martin Dahlö | MD, JD, PE |
12:00 - 13:00 | Lunch | ||
13:00 - 14:00 | Intro to Uppmax | Björn Viklund | |
14:00 - 15:00 | Intro to Uppmax | Björn Viklund | JD, PE |
15:00 - 15:15 | Coffee Break | ||
15:15 - 17:00 | Intro to Uppmax | Björn Viklund | JD, PE |
28-Jan-2020TueE10:1309 |
|||
09:00 - 09:30 | File types in Bioinformatics | Martin Dahlö | |
09:30 - 10:00 | File types in Bioinformatics | Martin Dahlö | AS, JD, PE |
10:00 - 10:15 | Coffee Break | ||
10:15 - 12:00 | Better terminal experience | Martin Dahlö | |
12:00 - 13:00 | Lunch | ||
13:00 - 14:00 | Advanced Linux | Martin Dahlö | |
14:00 - 15:00 | Advanced Linux | Martin Dahlö | AS, JD, PE |
15:00 - 15:15 | Coffee Break | ||
15:15 - 17:00 | Advanced Linux | Martin Dahlö | AS, JD, PE |
29-Jan-2020WedE10:1309 |
|||
09:00 - 10:00 | NGS Overview | Olga Petterson | |
10:00 - 10:15 | Coffee Break | ||
10:15 - 11:00 | NGS Overview | Olga Petterson | |
11:00 - 12:00 | NGS pipeline | Adam Ameur | |
12:00 - 13:00 | Lunch | ||
13:00 - 14:00 | Variant-calling workflow | Malin Larsson | |
14:00 - 15:00 | Variant-calling workflow | Malin Larsson | AJ, PE, MD |
15:00 - 15:15 | Coffee Break | ||
15:15 - 17:00 | Variant-calling workflow | Malin Larsson | AJ, PE, MD |
30-Jan-2020ThuE10:1309 |
|||
09:00 - 10:00 | Variant-calling workflow | Malin Larsson | AJ, PE |
10:00 - 10:15 | Coffee Break | ||
10:15 - 12:00 | Variant-calling workflow | Malin Larsson | AJ, PE |
12:00 - 13:00 | Lunch | ||
13:00 - 14:00 | Data management | Niclas Jareborg | |
14:00 - 15:00 | Intro to RNA-Seq | Roy Francis | |
15:00 - 15:15 | Coffee Break | ||
15:15 - 17:00 | RNA-Seq workflow | Roy Francis | PE, BS, NR |
31-Jan-2020FriE10:1309 |
|||
09:00 - 10:00 | RNA-Seq workflow | Roy Francis | |
10:00 - 10:15 | Coffee Break | ||
10:15 - 12:00 | RNA-Seq workflow | Roy Francis | |
12:00 - 13:00 | Lunch | ||
13:00 - 14:00 | NBIS and services | Björn Nystedt | |
14:00 - 15:00 | Open session | Roy Francis | PE, JD, AJ, OP |
Date Room number Slides Lab exercises
MD: Martin Dalhö, JD: Jacques Dainat, PE: Payam Emami, AS: Anders Sjölander, AJ: Anna Johansson, BS: Bengt Sennblad, NR: Nima Rafati, OP: Olga Petterson.