ChIP-seq data analysis course

Held in SciLifeLab Solna, from 2018-11-07 to 2018-11-09

Pre-course material

Alternative Files Locations

Schedule

Part I

Part II

  • Downstream analysis (Main differential binding and functional annotations workflow) [local version]
  • Downstream analysis (Main differential binding and functional annotations workflow) [Uppmax version]

  • ChIPseeker (ChIPseeker package for ChIP profiling, peaks annotations, visualisation and functional annotations) [local]

  • Csaw (Alternative differential binding analyses) [local version]

  • Broad peak calling (Calling broad peaks) [local]

  • Motifs (Motifs finding) [Uppmax]

  • Public resources (Finding data in public resources) [local]

  • Exo-spike (Scaling normalisation for ChIP-seq with exogenous chromatin spike) [local]

Nature submission

https://goo.gl/forms/DV48vrfqoUDBH2gq2


Address and travel suggestions

Travel Info

Course leaders

Agata Smialowska (email: agata.smialowska@nbis.se)

Olga Dethlefsen (email: olga.dethlefsen@nbis.se)