Training Tech Shorts

This is a series of short lessons in various technologies useful to our work.

Introduction to Container Registries

Docker

Github

Seqera

Various Tips and Tricks

Terminal

Quarto

Nano

MacOS

Nextflow

Conda

PacMan

R

Dardel

VSCode

Tips and Tricks

Miguel , Lucile , Lizel , Abu , Amrei , André , Matilda , Mahesh

When to use Nextflow?

Nextflow

Introduction to SSH Config and Tunneling

SSH

README’s in GitHub

Github

Documentation

Self-promotion

Introduction to VSCode

VSCode

Remote development

IDE

Introduction to Pixi

Pixi

Package management

Command runner

Introduction to Apptainer

Apptainer

Singularity

Containers

Package management

Quarto to Confluence

Quarto

Literate programming

Confluence

Introduction to Gitpod

Git

Github

Version control

Gitpod

Introduction to Quarto

Quarto

Literate programming

Introduction to Git

Git

Version control

Collaboration on Github

Git

Github

Version control

Collaboration