RSE Tools Tech Group

👋 Welcome to the NBIS RSE Tools Tech Group!

These blog posts are short walkthroughs on various Research Software Engineering (RSE) tools useful in bioinformatics. We aim to share a demonstration of a tool every two weeks.

Want to discuss or need help? Start a discussion on our Discussions page or reach out on the #tech-group-rse-tools channel on NBIS Slack.

Walkthroughs

Introduction to Docker

Docker
Containers
Package management
Oct 23, 2025
Martin Dahlö & Björn Viklund

Introduction to Container Registries

Docker
Github
Seqera
Jun 10, 2025
Mahesh

Various Tips and Tricks

Terminal
Quarto
Nano
MacOS
Nextflow
Conda
PacMan
R
Dardel
VSCode
Tips and Tricks
May 27, 2025
Miguel , Lucile , Lizel , Abu , Amrei , André , Matilda , Mahesh

When to use Nextflow?

Nextflow
May 13, 2025
Mahesh

Introduction to SSH Config and Tunneling

SSH
Apr 15, 2025
Mahesh

README’s in GitHub

Github
Documentation
Self-promotion
Mar 18, 2025
Amrei

Introduction to VSCode

VSCode
Remote development
IDE
Feb 18, 2025
Cormac

Introduction to Pixi

Pixi
Package management
Command runner
Jan 21, 2025
Mahesh , Amrei

Introduction to Apptainer

Apptainer
Singularity
Containers
Package management
Jun 4, 2024
Cormac

Quarto to Confluence

Quarto
Literate programming
Confluence
May 14, 2024
Tomas

Introduction to Gitpod

Git
Github
Version control
Gitpod
May 7, 2024
Mahesh

Introduction to Quarto

Quarto
Literate programming
Apr 16, 2024
Per

Introduction to Git

Git
Version control
Mar 19, 2024
Mahesh

Collaboration on Github

Git
Github
Version control
Collaboration
Mar 12, 2024
Mahesh
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