agat_sq_remove_redundant_entries.pl#
DESCRIPTION#
The script remove redundant entries: same seq_id,primary_tag,start,stop,ID,Parent. If ID and Parent attribute is not present, we do no remove the feature. If one of them do not exists we use "" instead.
SYNOPSIS#
agat_sq_remove_redundant_entries.pl -i <input file> [-o <output file>]
agat_sq_remove_redundant_entries.pl --help
OPTIONS#
-
-i, --gff, --file or --input
STRING: Input GTF/GFF file.
-
-o or --output
STRING: Output file. If no output file is specified, the output will be written to STDOUT. The result is in tabulate format.
-
-c or --config
String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose". The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
-
--help or -h
Display this helpful text.