agat_sq_add_hash_tag.pl#
DESCRIPTION#
The script aims to introduce hash tag (####) into the file. It allows for some tools using gff3 to handle independantly file chucks separated by the #### signal. Can make them more efficient.
SYNOPSIS#
agat_sq_add_hash_tag.pl -i <input file> [-o <output file>]
agat_sq_add_hash_tag.pl --help
OPTIONS#
-
--gff, --file or --input
STRING: Input GTF/GFF file.
-
-i or --interval
Integer: 1 or 2. 1 will add #### after each new sequence (column1 of the gff), while 2 will add the ### after each group of feature (gene). By default the value is 1.
-
-o or --output
STRING: Output file. If no output file is specified, the output will be written to STDOUT. The result is in tabulate format.
-
-c or --config
String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose". The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
-
--help or -h
Display this helpful text.