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agat_sp_webApollo_compliant.pl#

DESCRIPTION#

This script aim to remove useless/problematic information for webapollo, change some featuree type to avoid problem whem loading them into webapollo, and optimize some attribute for a nice displaying.

SYNOPSIS#

agat_sp_webApollo_compliant.pl -g infile.gff [ -o outfile ]
agat_sp_webApollo_compliant.pl --help

OPTIONS#

  • -g, --gff or -ref

    Input GTF/GFF file.

  • -o or --output

    Output GFF file. If no output file is specified, the output will be written to STDOUT.

  • -c or --config

    String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose". The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).

  • -h or --help

    Display this helpful text.