agat_sp_webApollo_compliant.pl#
DESCRIPTION#
This script aim to remove useless/problematic information for webapollo, change some featuree type to avoid problem whem loading them into webapollo, and optimize some attribute for a nice displaying.
SYNOPSIS#
agat_sp_webApollo_compliant.pl -g infile.gff [ -o outfile ]
agat_sp_webApollo_compliant.pl --help
OPTIONS#
-
-g, --gff or -ref
Input GTF/GFF file.
-
-o or --output
Output GFF file. If no output file is specified, the output will be written to STDOUT.
-
-c or --config
String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose". The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
-
-h or --help
Display this helpful text.