agat_sp_split_by_level2_feature.pl#
DESCRIPTION#
The script will split the gff input file into different files according to the different Level2 feature that it contains.
SYNOPSIS#
agat_sp_split_by_level2_feature.pl -g infile.gff [ -o outfolder ]
agat_sp_split_by_level2_feature.pl --help
OPTIONS#
-
-g, --gff or -ref
Input GTF/GFF file.
-
-o or --output
Output folder. If no output folder provided, the default name will be <split_result>.
-
-c or --config
String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose". The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
-
-h or --help
Display this helpful text.