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agat_sp_functional_statistics.pl#

DESCRIPTION#

The script aims to summerize functional information stored in the file.

SYNOPSIS#

agat_sp_functional_statistics.pl --gff file.gff  [ -o outfile ]
agat_sp_functional_statistics.pl --help

OPTIONS#

  • --gff or -f

    Input GTF/GFF file.

  • --gs or -g

    This option inform about the genome size in oder to compute more statistics. You can give the size in Nucleotide or directly the fasta file.

  • --output or -o

    Folder where will be written the results. [Default output_functional_statistics]

  • -c or --config

    String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose". The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).

  • -h or --help

    Display this helpful text.