agat_sp_functional_statistics.pl#
DESCRIPTION#
The script aims to summerize functional information stored in the file.
SYNOPSIS#
agat_sp_functional_statistics.pl --gff file.gff [ -o outfile ]
agat_sp_functional_statistics.pl --help
OPTIONS#
-
--gff or -f
Input GTF/GFF file.
-
--gs or -g
This option inform about the genome size in oder to compute more statistics. You can give the size in Nucleotide or directly the fasta file.
-
--output or -o
Folder where will be written the results. [Default output_functional_statistics]
-
-c or --config
String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose". The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
-
-h or --help
Display this helpful text.