agat_convert_sp_gff2tsv.pl#

DESCRIPTION#

The script aims to convert gtf/gff file into tabulated file. Attribute's tags from the 9th column become column titles.

SYNOPSIS#

agat_convert_sp_gff2tsv.pl -gff file.gff [ -o outfile ]
agat_convert_sp_gff2tsv.pl --help

OPTIONS#

• --gff or -f

  Input GTF/GFF file.

• -o , --output , --out or --outfile

  Output GFF file. If no output file is specified, the output will be written to STDOUT.

• -c or --config

  String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose". The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).

• -h or --help

  Display this helpful text.