agat_convert_mfannot2gff.pl#
DESCRIPTION#
Conversion utility for MFannot "masterfile" annotation produced by the MFannot pipeline (http://megasun.bch.umontreal.ca/RNAweasel/). Reports GFF3 format.
SYNOPSIS#
agat_convert_mfannot2gff.pl -m <mfannot> -o <gff>
agat_convert_mfannot2gff.pl --help
COPYRIGHT AND LICENSE#
Copyright (C) 2015, Brandon Seah (kbseah@mpi-bremen.de) ... GPL-3 ... modified by jacques dainat 2017-11
OPTIONS#
-
-m or -i or --mfannot
The mfannot input file
-
-g or -o or --gff
the gff output file
-
-c or --config
String - Input agat config file. By default AGAT takes as input agat_config.yaml file from the working directory if any, otherwise it takes the orignal agat_config.yaml shipped with AGAT. To get the agat_config.yaml locally type: "agat config --expose". The --config option gives you the possibility to use your own AGAT config file (located elsewhere or named differently).
-
-h or --help
Display this helpful text.